Q580K6 (Q580K6_TRYB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
40S ribosomal protein S15a, putative EMBL AAX79341.1

Gene names

ORF Names:

Tb11.02.4000 EMBL EAN79576.1, Tb927.3.4360 EMBL AAX79341.1

Organism

Trypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]

Taxonomic identifier

999953 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Euglenozoa › Kinetoplastida › Trypanosomatidae › Trypanosoma › Trypanozoon › Trypanosoma brucei › Trypanosoma brucei brucei

Protein attributes

Sequence length	130 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S8P family. RuleBase RU003660

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003660 EMBL AAX79341.1
Technical term	3D-structure PDB 3ZEY Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q580K6 [UniParc]. Last modified May 10, 2005. Version 1. Checksum: 05991471432979F4	FASTA	130	14,645
	10 20 30 40 50 60 MTMMSVLANA LRCIAGAERR GKRQVLIRPS SKVVVKFLQV MQKHGYIGEF EIVDDHRAGK 70 80 90 100 110 120 IVVNLNGRLN KCGAICPRFD CTARDFEKWV KNILPSRQFG FVVLTTSLGI MDHEEARARN 130 TGGKVLGFFY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A. Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: GUTat10.1 EMBL AAX79341.1.
[2]	El-Sayed N.M., Khalak H., Adams M.D. Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: GUTat10.1 EMBL AAX79341.1.
[3]	"Comparative genomics of trypanosomatid parasitic protozoa." El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N. Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 927/4 GUTat10.1 EMBL AAZ10469.1.
[4]	"The genome of the African trypanosome Trypanosoma brucei." Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A. Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 927/4 GUTat10.1 EMBL AAZ10469.1.
[5]	"Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8." Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 927/4 GUTat10.1 EMBL AAZ10469.1.
[6]	Haas B., Blandin G., El-Sayed N. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: GUTat10.1 EMBL AAX79341.1.
[7]	"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome." Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J. Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AC096673 Genomic DNA. Translation: AAX79341.1.
CP000066 Genomic DNA. Translation: AAZ10469.1.
CH464491 Genomic DNA. Translation: EAN79576.1.

RefSeq

XP_828688.1. XM_823595.1.
XP_844028.1. XM_838935.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ZEY	electron microscopy	5.57	J	1-130	[»]

SMR

Q580K6. Positions 4-130.

ModBase

Search...

Protein-protein interaction databases

STRING

5691.Tb927.3.4360.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblProtists

AAZ10469; AAZ10469; Tb927.3.4360.
EAN79576; EAN79576; Tb11.02.4000.

GeneID

3656375.
3665648.

KEGG

tbr:Tb11.02.4000.
tbr:Tb927.3.4360.

Phylogenomic databases

eggNOG

COG0096.

HOGENOM

HOG000204097.

KO

K02957.

OMA

FEKWEKR.

ProtClustDB

PTZ00158.

Family and domain databases

InterPro

IPR000630. Ribosomal_S8.
[Graphical view]

PANTHER

PTHR11758. PTHR11758. 1 hit.

Pfam

PF00410. Ribosomal_S8. 1 hit.
[Graphical view]

SUPFAM

SSF56047. Ribosomal_S8. 1 hit.

PROSITE

PS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q580K6_TRYB2

Accession

Primary (citable) accession number: Q580K6
Secondary accession number(s): D6XDZ2

Entry history

Integrated into UniProtKB/TrEMBL:	May 10, 2005
Last sequence update:	May 10, 2005
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)