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Protein

Putative L(+)-tartrate dehydratase subunit beta

Gene

MJ0617

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

(R,R)-tartrate = oxaloacetate + H2O.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei36Sequence analysis1
Binding sitei104SubstrateSequence analysis1

GO - Molecular functioni

Keywordsi

Molecular functionLyase

Names & Taxonomyi

Protein namesi
Recommended name:
Putative L(+)-tartrate dehydratase subunit betaBy similarity (EC:4.2.1.32By similarity)
Short name:
L-TTD betaBy similarity
Gene namesi
Ordered Locus Names:MJ0617
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001956621 – 195Putative L(+)-tartrate dehydratase subunit betaAdd BLAST195

Interactioni

Subunit structurei

Heterotetramer of two alpha and two beta subunits.By similarity

Protein-protein interaction databases

STRINGi243232.MJ_0617.

Structurei

Secondary structure

1195
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 7Combined sources6
Helixi10 – 15Combined sources6
Beta strandi21 – 30Combined sources10
Helixi33 – 44Combined sources12
Beta strandi57 – 59Combined sources3
Beta strandi64 – 68Combined sources5
Beta strandi71 – 76Combined sources6
Helixi82 – 85Combined sources4
Turni86 – 88Combined sources3
Helixi89 – 96Combined sources8
Beta strandi100 – 105Combined sources6
Helixi111 – 118Combined sources8
Beta strandi121 – 124Combined sources4
Helixi130 – 133Combined sources4
Helixi134 – 136Combined sources3
Beta strandi137 – 145Combined sources9
Helixi146 – 149Combined sources4
Turni151 – 153Combined sources3
Beta strandi154 – 170Combined sources17

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5DNIX-ray2.30A/B1-179[»]
ProteinModelPortaliQ58034.
SMRiQ58034.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-I fumarase family.Curated

Phylogenomic databases

eggNOGiarCOG04406. Archaea.
COG1838. LUCA.
InParanoidiQ58034.
KOiK01678.
OMAiIYHAGPI.
OrthoDBiPOG093Z0DTX.
PhylomeDBiQ58034.

Family and domain databases

Gene3Di3.20.130.10. 1 hit.
InterProiView protein in InterPro
IPR004647. Fe-S_hydro-lyase_TtdB-typ_cat.
PfamiView protein in Pfam
PF05683. Fumerase_C. 1 hit.
SUPFAMiSSF117457. SSF117457. 1 hit.
TIGRFAMsiTIGR00723. ttdB_fumA_fumB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q58034-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYTFNKLTK KDVKKLKVGD IVYLNGKIYT ARDEAHLKII EMLKSNEKLP
60 70 80 90 100
FDLNESIIYH AGPIMKKVND SWVCVSIGPT TSARMNDVEE EFIKLTNISA
110 120 130 140 150
IVGKGGMKKE LLKTFEDYGV VYLAAPGGCA ALLANSVKRV DNVYFLDELG
160 170 180 190
MPEAVWELEV NNFGPLIVAM DSHGNSIYEE VNKKVYEKLN ELIGL
Length:195
Mass (Da):21,868
Last modified:November 1, 1996 - v1
Checksum:iA5FDEB0E77D00902
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98612.1.
PIRiA64377.
RefSeqiWP_010870122.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB98612; AAB98612; MJ_0617.
GeneIDi1451483.
KEGGimja:MJ_0617.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiTTDB_METJA
AccessioniPrimary (citable) accession number: Q58034
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: March 15, 2017
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families