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Q57ZH1

- Q57ZH1_TRYB2

UniProt

Q57ZH1 - Q57ZH1_TRYB2

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Protein
Submitted name:

60S ribosomal protein L23a, putative

Gene

Tb927.7.5180

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. RNA binding Source: GeneDB_Tbrucei
  3. structural constituent of ribosome Source: GeneDB_Tbrucei

GO - Biological processi

  1. ribosome biogenesis Source: GeneDB_Tbrucei
  2. translation Source: GeneDB_Tbrucei
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L23a, putativeImported
Gene namesi
ORF Names:Tb927.7.5180Imported
OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
Taxonomic identifieri185431 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
ProteomesiUP000008524: Chromosome 7

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZF7electron microscopy5.57X57-220[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231365.
KOiK02893.
OMAiAFRIIRY.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_A. Ribosomal_L23_A.
MF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR005633. Ribosomal_L23/L25_N.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
PF03939. Ribosomal_L23eN. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q57ZH1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MMISFAQGSG VLVWGEWGSQ LHRLQTTVIM ISYPFFHYWI SPPVFCRLLS
60 70 80 90 100
LRLTRTMPAK AASAAASKKN SAPKSAVSKK VAKKGAPAAA AKPTKVVKVT
110 120 130 140 150
KRKAYTRPQF RRPHTYRRPA TVKPSSNVSA IKNKWDAFRI IRYPLTTDKA
160 170 180 190 200
MKKIEENNTL TFIVDSRANK TEIKKAIRKL YQVKTVKVNT LIRPDGLKKA
210 220
YIRLSASYDA LDTANKMGLV
Length:220
Mass (Da):24,712
Last modified:May 10, 2005 - v1
Checksum:i0C19EDF47C6BFC25
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC105378 Genomic DNA. Translation: AAX79510.1.
CP000070 Genomic DNA. Translation: AAZ12582.1.
RefSeqiXP_846141.1. XM_841048.1.

Genome annotation databases

GeneIDi3658732.
KEGGitbr:Tb927.7.5180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC105378 Genomic DNA. Translation: AAX79510.1 .
CP000070 Genomic DNA. Translation: AAZ12582.1 .
RefSeqi XP_846141.1. XM_841048.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3ZF7 electron microscopy 5.57 X 57-220 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3658732.
KEGGi tbr:Tb927.7.5180.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231365.
KOi K02893.
OMAi AFRIIRY.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_A. Ribosomal_L23_A.
MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR005633. Ribosomal_L23/L25_N.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
PF03939. Ribosomal_L23eN. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  2. El-Sayed N.M., Khalak H., Adams M.D.
    Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 927/4 GUTat10.1Imported.
  4. "The genome of the African trypanosome Trypanosoma brucei."
    Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
    , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
    Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 927/4 GUTat10.1Imported.
  5. Haas B., Blandin G., El-Sayed N.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  6. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
    Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
    Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS) OF 57-220.

Entry informationi

Entry nameiQ57ZH1_TRYB2
AccessioniPrimary (citable) accession number: Q57ZH1
Secondary accession number(s): D6XJ49
Entry historyi
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3