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Q57YL6

- Q57YL6_TRYB2

UniProt

Q57YL6 - Q57YL6_TRYB2

Protein

40S ribosomal protein S8

Gene

Tb927.8.6150

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: GeneDB_Tbrucei

    GO - Biological processi

    1. translation Source: GeneDB_Tbrucei

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S8UniRule annotation
    Gene namesi
    ORF Names:Tb927.8.6150Imported, Tb927.8.6160Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 8

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: GeneDB_Tbrucei

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.5751-220[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S8e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2007.
    HOGENOMiHOG000211544.
    KOiK02995.
    OMAiWRVCERE.

    Family and domain databases

    InterProiIPR001047. Ribosomal_S8e.
    IPR022309. Ribosomal_S8e/biogenesis_NSA2.
    IPR018283. Ribosomal_S8e_CS.
    [Graphical view]
    PANTHERiPTHR10394. PTHR10394. 1 hit.
    PfamiPF01201. Ribosomal_S8e. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00307. S8e. 1 hit.
    PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q57YL6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGIVRSRLHK RKITGGKTKI HRKRMKAELG RLPANTKLGP RRVSPVRARG    50
    GNFKLRGLRL DTGNFAWGTE ASAQRARILD VVYNATSNEL VRTKTLVKNC 100
    IVVVDAAPFR LWYAKHYGID LGASKSKKAT QKSTEKKSKK SAHAAVEKYD 150
    VKKASSKLKR KWEYRRKHHK IEKALADQLR EGRLLARITS RPGQTGRADG 200
    ALLEGAELQF YLKKLDKKKR 220
    Length:220
    Mass (Da):24,937
    Last modified:May 10, 2005 - v1
    Checksum:i4663D9FCF5F4AA49
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159405 Genomic DNA. Translation: AAX69270.1.
    AC159405 Genomic DNA. Translation: AAX69272.1.
    CP000071 Genomic DNA. Translation: AAZ13379.1.
    CP000071 Genomic DNA. Translation: AAZ13380.1.
    RefSeqiXP_847445.1. XM_842352.1.
    XP_847446.1. XM_842353.1.

    Genome annotation databases

    EnsemblProtistsiAAZ13379; AAZ13379; Tb927.8.6150.
    AAZ13380; AAZ13380; Tb927.8.6160.
    GeneIDi3659617.
    3659618.
    KEGGitbr:Tb927.8.6150.
    tbr:Tb927.8.6160.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159405 Genomic DNA. Translation: AAX69270.1 .
    AC159405 Genomic DNA. Translation: AAX69272.1 .
    CP000071 Genomic DNA. Translation: AAZ13379.1 .
    CP000071 Genomic DNA. Translation: AAZ13380.1 .
    RefSeqi XP_847445.1. XM_842352.1.
    XP_847446.1. XM_842353.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 5 1-220 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi AAZ13379 ; AAZ13379 ; Tb927.8.6150 .
    AAZ13380 ; AAZ13380 ; Tb927.8.6160 .
    GeneIDi 3659617.
    3659618.
    KEGGi tbr:Tb927.8.6150.
    tbr:Tb927.8.6160.

    Phylogenomic databases

    eggNOGi COG2007.
    HOGENOMi HOG000211544.
    KOi K02995.
    OMAi WRVCERE.

    Family and domain databases

    InterProi IPR001047. Ribosomal_S8e.
    IPR022309. Ribosomal_S8e/biogenesis_NSA2.
    IPR018283. Ribosomal_S8e_CS.
    [Graphical view ]
    PANTHERi PTHR10394. PTHR10394. 1 hit.
    Pfami PF01201. Ribosomal_S8e. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00307. S8e. 1 hit.
    PROSITEi PS01193. RIBOSOMAL_S8E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
      Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
      , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    5. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ57YL6_TRYB2
    AccessioniPrimary (citable) accession number: Q57YL6
    Secondary accession number(s): D6XLZ9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3