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Q57VV0

- Q57VV0_TRYB2

UniProt

Q57VV0 - Q57VV0_TRYB2

Protein
Submitted name:

40S ribosomal protein S16, putative

Gene

Tb927.7.1040

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: GeneDB_Tbrucei

    GO - Biological processi

    1. translation Source: GeneDB_Tbrucei

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    40S ribosomal protein S16, putativeImported
    Gene namesi
    ORF Names:Tb927.7.1040Imported, Tb927.7.1050Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 7

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: GeneDB_Tbrucei

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.57K1-149[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0103.
    HOGENOMiHOG000019803.
    KOiK02960.
    OMAiMARMKIM.

    Family and domain databases

    Gene3Di3.30.230.10. 1 hit.
    InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR000754. Ribosomal_S9.
    [Graphical view]
    PANTHERiPTHR21569. PTHR21569. 1 hit.
    PfamiPF00380. Ribosomal_S9. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q57VV0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSGEKTHTLK QVQTFGKKKT AIAVATVTKA PQCNIRINGV PISQILPETL    50
    RAKIMEAVKV VGARYFSRLR VDVRVRGSGQ VAQAYAVRQA IAKGIIAYYQ 100
    KYHNEIEKAA LKDKYLEYDK FLLIADPRRC EPKKWGRHSA RTRFTKSYR 149
    Length:149
    Mass (Da):16,998
    Last modified:May 10, 2005 - v1
    Checksum:i2FA00B3EB1FD7DDF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159437 Genomic DNA. Translation: AAX70268.1.
    AC159437 Genomic DNA. Translation: AAX70269.1.
    CP000070 Genomic DNA. Translation: AAZ12169.1.
    CP000070 Genomic DNA. Translation: AAZ12170.1.
    RefSeqiXP_845728.1. XM_840635.1.
    XP_845729.1. XM_840636.1.

    Genome annotation databases

    EnsemblProtistsiAAZ12169; AAZ12169; Tb927.7.1040.
    AAZ12170; AAZ12170; Tb927.7.1050.
    GeneIDi3658312.
    3658313.
    KEGGitbr:Tb927.7.1040.
    tbr:Tb927.7.1050.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159437 Genomic DNA. Translation: AAX70268.1 .
    AC159437 Genomic DNA. Translation: AAX70269.1 .
    CP000070 Genomic DNA. Translation: AAZ12169.1 .
    CP000070 Genomic DNA. Translation: AAZ12170.1 .
    RefSeqi XP_845728.1. XM_840635.1.
    XP_845729.1. XM_840636.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 K 1-149 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi AAZ12169 ; AAZ12169 ; Tb927.7.1040 .
    AAZ12170 ; AAZ12170 ; Tb927.7.1050 .
    GeneIDi 3658312.
    3658313.
    KEGGi tbr:Tb927.7.1040.
    tbr:Tb927.7.1050.

    Phylogenomic databases

    eggNOGi COG0103.
    HOGENOMi HOG000019803.
    KOi K02960.
    OMAi MARMKIM.

    Family and domain databases

    Gene3Di 3.30.230.10. 1 hit.
    InterProi IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR000754. Ribosomal_S9.
    [Graphical view ]
    PANTHERi PTHR21569. PTHR21569. 1 hit.
    Pfami PF00380. Ribosomal_S9. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
      Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
      , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    5. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ57VV0_TRYB2
    AccessioniPrimary (citable) accession number: Q57VV0
    Secondary accession number(s): D6XK22
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3