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Q57VM1 (Q57VM1_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Tb927.8.1330 EMBL AAX70336.1, Tb927.8.1340 EMBL AAX70337.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length276 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein EMBL AAX70337.1
   Technical term3D-structure PDB 3ZF7
Complete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q57VM1 [UniParc].

Last modified May 10, 2005. Version 1.
Checksum: 31FA8793A72FAB61

FASTA27630,879
        10         20         30         40         50         60 
MAGKEVKKAV KPTKKAGVPY KKPEVTQKKA KASAAAPSPF VARPKDFGIG RDVPYARDLS 

        70         80         90        100        110        120 
RFMRWPTFVT MQRKKRVLQR RLKVPPALNQ FTKVLDRSSR NELLKLVKKY APETRKARRD 

       130        140        150        160        170        180 
RLTKVAEEKK KNPKGTVSTK APLCVVSGLQ EVTRTIEKKT ARLVLIANNV DPIELVLWMP 

       190        200        210        220        230        240 
TLCRANKIPY AIVKDKARLG DAIGRKTATC VAFTDVNAED QAALKNLTRS VNARFLARSD 

       250        260        270 
VIRRQWGGLQ LSLRSRAELR KKRARTAGND AAAKAA 

« Hide

References

« Hide 'large scale' references
[1]"Comparative genomics of trypanosomatid parasitic protozoa."
El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. expand/collapse author list , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N.
Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL AAZ12903.1.
[2]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL AAZ12903.1.
[3]"Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. expand/collapse author list , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL AAZ12903.1.
[4]Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. expand/collapse author list , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: GUTat10.1 EMBL AAX70337.1.
[5]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC159438 Genomic DNA. Translation: AAX70336.1.
AC159438 Genomic DNA. Translation: AAX70337.1.
CP000071 Genomic DNA. Translation: AAZ12903.1.
CP000071 Genomic DNA. Translation: AAZ12904.1.
RefSeqXP_846969.1. XM_841876.1.
XP_846970.1. XM_841877.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZF7electron microscopy5.57x1-276[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsAAZ12903; AAZ12903; Tb927.8.1330.
AAZ12904; AAZ12904; Tb927.8.1340.
GeneID3659108.
3659111.
KEGGtbr:Tb927.8.1330.
tbr:Tb927.8.1340.

Phylogenomic databases

eggNOGCOG1358.
HOGENOMHOG000216644.
KOK02936.
OMASIAFTQV.
ProtClustDBPTZ00222.

Family and domain databases

InterProIPR001921. Ribosomal_L7A/L8.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
[Graphical view]
PANTHERPTHR23105:SF1. PTHR23105:SF1. 1 hit.
PfamPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSPR00881. L7ARS6FAMILY.
PR00882. RIBOSOMALL7A.
ProtoNetSearch...

Entry information

Entry nameQ57VM1_TRYB2
AccessionPrimary (citable) accession number: Q57VM1
Secondary accession number(s): D6XMW1
Entry history
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: March 19, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)