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Q57V55

- Q57V55_TRYB2

UniProt

Q57V55 - Q57V55_TRYB2

Protein

60S ribosomal protein L13

Gene

Tb927.3.3310

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L13UniRule annotation
    Gene namesi
    ORF Names:Tb927.3.3310Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 3

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZF7electron microscopy5.57N12-229[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L13e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG4352.
    HOGENOMiHOG000170452.
    KOiK02873.
    OMAiRKMARTI.

    Family and domain databases

    InterProiIPR001380. Ribosomal_L13e.
    IPR018256. Ribosomal_L13e_CS.
    [Graphical view]
    PANTHERiPTHR11722. PTHR11722. 1 hit.
    PfamiPF01294. Ribosomal_L13e. 1 hit.
    [Graphical view]
    PROSITEiPS01104. RIBOSOMAL_L13E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q57V55-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLFIAVRVLA PMPKGNNAIP HVHQRKHWNP CSSQKGNVKV FFNQPAQKQR    50
    RRRLRLLKAK KIFPRPLKAL RPQVNCPTVR YNMKRRLGRG FSLEELKAAG 100
    VKPRYARTIG IRVDRRRKNK SEEGMNINVQ RLKTYMSKLV LFPLNRKKPQ 150
    KGDATEEEVK AATQDRSRYG TAAVGGLVTP AREAPRKVTE EESTKKMYKF 200
    LKKNHSAVRF FRARNRRAAR KEAKENEKK 229
    Length:229
    Mass (Da):26,639
    Last modified:May 10, 2005 - v1
    Checksum:iB226D4DCEA3AF274
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159446 Genomic DNA. Translation: AAX70513.1.
    CP000066 Genomic DNA. Translation: AAZ10365.1.
    RefSeqiXP_843924.1. XM_838831.1.

    Genome annotation databases

    EnsemblProtistsiAAZ10365; AAZ10365; Tb927.3.3310.
    GeneIDi3656272.
    KEGGitbr:Tb927.3.3310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159446 Genomic DNA. Translation: AAX70513.1 .
    CP000066 Genomic DNA. Translation: AAZ10365.1 .
    RefSeqi XP_843924.1. XM_838831.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZF7 electron microscopy 5.57 N 12-229 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi AAZ10365 ; AAZ10365 ; Tb927.3.3310 .
    GeneIDi 3656272.
    KEGGi tbr:Tb927.3.3310.

    Phylogenomic databases

    eggNOGi COG4352.
    HOGENOMi HOG000170452.
    KOi K02873.
    OMAi RKMARTI.

    Family and domain databases

    InterProi IPR001380. Ribosomal_L13e.
    IPR018256. Ribosomal_L13e_CS.
    [Graphical view ]
    PANTHERi PTHR11722. PTHR11722. 1 hit.
    Pfami PF01294. Ribosomal_L13e. 1 hit.
    [Graphical view ]
    PROSITEi PS01104. RIBOSOMAL_L13E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
      Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
      , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    5. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS) OF 12-229.

    Entry informationi

    Entry nameiQ57V55_TRYB2
    AccessioniPrimary (citable) accession number: Q57V55
    Secondary accession number(s): D6XDN8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3