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Q57V55 (Q57V55_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
60S ribosomal protein L13 RuleBase RU000572
Gene names
ORF Names:Tb927.3.3310 EMBL AAX70513.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length229 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L13e family. RuleBase RU000572

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein RuleBase RU000572 EMBL AAX70513.1
   Technical term3D-structure PDB 3ZF7
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q57V55 [UniParc].

Last modified May 10, 2005. Version 1.
Checksum: B226D4DCEA3AF274

FASTA22926,639
        10         20         30         40         50         60 
MLFIAVRVLA PMPKGNNAIP HVHQRKHWNP CSSQKGNVKV FFNQPAQKQR RRRLRLLKAK 

        70         80         90        100        110        120 
KIFPRPLKAL RPQVNCPTVR YNMKRRLGRG FSLEELKAAG VKPRYARTIG IRVDRRRKNK 

       130        140        150        160        170        180 
SEEGMNINVQ RLKTYMSKLV LFPLNRKKPQ KGDATEEEVK AATQDRSRYG TAAVGGLVTP 

       190        200        210        220 
AREAPRKVTE EESTKKMYKF LKKNHSAVRF FRARNRRAAR KEAKENEKK 

« Hide

References

« Hide 'large scale' references
[1]"Comparative genomics of trypanosomatid parasitic protozoa."
El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. expand/collapse author list , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N.
Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL AAZ10365.1.
[2]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL AAZ10365.1.
[3]"Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. expand/collapse author list , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL AAZ10365.1.
[4]Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G. expand/collapse author list , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: GUTat10.1 EMBL AAX70513.1.
[5]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS) OF 12-229.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC159446 Genomic DNA. Translation: AAX70513.1.
CP000066 Genomic DNA. Translation: AAZ10365.1.
RefSeqXP_843924.1. XM_838831.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZF7electron microscopy5.57N12-229[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsAAZ10365; AAZ10365; Tb927.3.3310.
GeneID3656272.
KEGGtbr:Tb927.3.3310.

Phylogenomic databases

eggNOGCOG4352.
HOGENOMHOG000170452.
KOK02873.
OMADSYEHET.
ProtClustDBPTZ00192.

Family and domain databases

InterProIPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view]
PANTHERPTHR11722. PTHR11722. 1 hit.
PfamPF01294. Ribosomal_L13e. 1 hit.
[Graphical view]
PROSITEPS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ57V55_TRYB2
AccessionPrimary (citable) accession number: Q57V55
Secondary accession number(s): D6XDN8
Entry history
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: November 13, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)