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Q57UJ8

- Q57UJ8_TRYB2

UniProt

Q57UJ8 - Q57UJ8_TRYB2

Protein
Submitted name:

60S ribosomal protein L39, putative

Gene

Tb927.8.5260

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: GeneDB_Tbrucei

    GO - Biological processi

    1. translation Source: GeneDB_Tbrucei

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    60S ribosomal protein L39, putativeImported
    Gene namesi
    ORF Names:Tb927.8.5260Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 8

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: GeneDB_Tbrucei

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZF7electron microscopy5.57q1-51[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG119718.
    HOGENOMiHOG000230627.
    KOiK02924.
    OMAiSANKTFR.

    Family and domain databases

    Gene3Di1.10.1620.10. 1 hit.
    HAMAPiMF_00629. Ribosomal_L39e.
    InterProiIPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view]
    PANTHERiPTHR19970. PTHR19970. 1 hit.
    PfamiPF00832. Ribosomal_L39. 1 hit.
    [Graphical view]
    SUPFAMiSSF48662. SSF48662. 1 hit.
    PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q57UJ8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRFKPLAIK KKYAKKLKQN RPVPYWIRLR TGNRIKWNEK RRHWRRTKLH   50
    Y 51
    Length:51
    Mass (Da):6,547
    Last modified:May 10, 2005 - v1
    Checksum:iBA0287F7F269B489
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159451 Genomic DNA. Translation: AAX70731.1.
    CP000071 Genomic DNA. Translation: AAZ13290.1.
    RefSeqiXP_847356.1. XM_842263.1.

    Genome annotation databases

    EnsemblProtistsiAAZ13290; AAZ13290; Tb927.8.5260.
    GeneIDi3659529.
    KEGGitbr:Tb927.8.5260.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159451 Genomic DNA. Translation: AAX70731.1 .
    CP000071 Genomic DNA. Translation: AAZ13290.1 .
    RefSeqi XP_847356.1. XM_842263.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZF7 electron microscopy 5.57 q 1-51 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi AAZ13290 ; AAZ13290 ; Tb927.8.5260 .
    GeneIDi 3659529.
    KEGGi tbr:Tb927.8.5260.

    Phylogenomic databases

    eggNOGi NOG119718.
    HOGENOMi HOG000230627.
    KOi K02924.
    OMAi SANKTFR.

    Family and domain databases

    Gene3Di 1.10.1620.10. 1 hit.
    HAMAPi MF_00629. Ribosomal_L39e.
    InterProi IPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view ]
    PANTHERi PTHR19970. PTHR19970. 1 hit.
    Pfami PF00832. Ribosomal_L39. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48662. SSF48662. 1 hit.
    PROSITEi PS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
      Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
      , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    5. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ57UJ8_TRYB2
    AccessioniPrimary (citable) accession number: Q57UJ8
    Secondary accession number(s): D6XLR0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3