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Q57CS3

- RL6_BRUAB

UniProt

Q57CS3 - RL6_BRUAB

Protein

50S ribosomal protein L6

Gene

rplF

Organism
Brucella abortus biovar 1 (strain 9-941)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciBABO262698:GJC2-1245-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L6UniRule annotation
    Gene namesi
    Name:rplFUniRule annotation
    Ordered Locus Names:BruAb1_1223
    OrganismiBrucella abortus biovar 1 (strain 9-941)
    Taxonomic identifieri262698 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000000540: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17717750S ribosomal protein L6PRO_0000265226Add
    BLAST

    Proteomic databases

    PRIDEiQ57CS3.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi262698.BruAb1_1223.

    Structurei

    3D structure databases

    ProteinModelPortaliQ57CS3.
    SMRiQ57CS3. Positions 2-177.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L6P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0097.
    HOGENOMiHOG000039903.
    KOiK02933.
    OMAiGNVITFA.
    OrthoDBiEOG67DPRD.

    Family and domain databases

    Gene3Di3.90.930.12. 2 hits.
    HAMAPiMF_01365_B. Ribosomal_L6_B.
    InterProiIPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view]
    PANTHERiPTHR11655. PTHR11655. 1 hit.
    PfamiPF00347. Ribosomal_L6. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSiPR00059. RIBOSOMALL6.
    SUPFAMiSSF56053. SSF56053. 2 hits.
    TIGRFAMsiTIGR03654. L6_bact. 1 hit.
    PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q57CS3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRIGKKPVP VPAGVTGSVE GQTVKAKGAK GELSFVVHDE VLVKMEDGAV    50
    RVDPRDQSKE ARSKWGMSRT MISNIFVGVK DGFEKKLEIS GVGYRAAMQG 100
    KNLQLSLGFS HEVVYDVPAG ITVAVPKPTE IVVTGIDKQQ VGQVAAEIRE 150
    YRGPEPYKGK GVKYAGEKIV RKEGKKK 177
    Length:177
    Mass (Da):19,138
    Last modified:May 10, 2005 - v1
    Checksum:i954B9A9340620F35
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017223 Genomic DNA. Translation: AAX74561.1.
    RefSeqiYP_221922.1. NC_006932.1.

    Genome annotation databases

    EnsemblBacteriaiAAX74561; AAX74561; BruAb1_1223.
    GeneIDi3340117.
    KEGGibmb:BruAb1_1223.
    PATRICi17824138. VBIBruAbo15061_1291.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017223 Genomic DNA. Translation: AAX74561.1 .
    RefSeqi YP_221922.1. NC_006932.1.

    3D structure databases

    ProteinModelPortali Q57CS3.
    SMRi Q57CS3. Positions 2-177.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262698.BruAb1_1223.

    Proteomic databases

    PRIDEi Q57CS3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAX74561 ; AAX74561 ; BruAb1_1223 .
    GeneIDi 3340117.
    KEGGi bmb:BruAb1_1223.
    PATRICi 17824138. VBIBruAbo15061_1291.

    Phylogenomic databases

    eggNOGi COG0097.
    HOGENOMi HOG000039903.
    KOi K02933.
    OMAi GNVITFA.
    OrthoDBi EOG67DPRD.

    Enzyme and pathway databases

    BioCyci BABO262698:GJC2-1245-MONOMER.

    Family and domain databases

    Gene3Di 3.90.930.12. 2 hits.
    HAMAPi MF_01365_B. Ribosomal_L6_B.
    InterProi IPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view ]
    PANTHERi PTHR11655. PTHR11655. 1 hit.
    Pfami PF00347. Ribosomal_L6. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSi PR00059. RIBOSOMALL6.
    SUPFAMi SSF56053. SSF56053. 2 hits.
    TIGRFAMsi TIGR03654. L6_bact. 1 hit.
    PROSITEi PS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis."
      Halling S.M., Peterson-Burch B.D., Bricker B.J., Zuerner R.L., Qing Z., Li L.-L., Kapur V., Alt D.P., Olsen S.C.
      J. Bacteriol. 187:2715-2726(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 9-941.

    Entry informationi

    Entry nameiRL6_BRUAB
    AccessioniPrimary (citable) accession number: Q57CS3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 12, 2006
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Brucella abortus strain 9-941
      Brucella abortus (strain 9-941): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3