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Q57AY3 (RIMM_BRUAB) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome maturation factor RimM
Gene names
Name:rimM
Ordered Locus Names:BruAb1_1891
OrganismBrucella abortus biovar 1 (strain 9-941) [Complete proteome] [HAMAP]
Taxonomic identifier262698 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella

Protein attributes

Sequence length189 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP-Rule MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Sequence similarities

Belongs to the RimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: InterPro

ribosomal small subunit biogenesis

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 189189Ribosome maturation factor RimM HAMAP-Rule MF_00014
PRO_0000244114

Regions

Domain96 – 16974PRC barrel

Sequences

Sequence LengthMass (Da)Tools
Q57AY3 [UniParc].

Last modified May 10, 2005. Version 1.
Checksum: 81FB87E6A60D690E

FASTA18920,554
        10         20         30         40         50         60 
MPRPENPIQL AVIGAAHGTR GEVRVKTFTG DPLAIADYGL LYDEQGKAYE ILEARVAKTV 

        70         80         90        100        110        120 
VIVRFKGVND RNAAEALNGT ELFIDRSQLP DEELDEDEFF QTDLIGLEAV DGDGKSYGVV 

       130        140        150        160        170        180 
SAIFDFGGGD LIELSEKGKR PMLIPFTEAA VPEIDFDKGI IKVEPHAAGL IADEHDNPPH 


ESGKKPKKP 

« Hide

References

[1]"Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis."
Halling S.M., Peterson-Burch B.D., Bricker B.J., Zuerner R.L., Qing Z., Li L.-L., Kapur V., Alt D.P., Olsen S.C.
J. Bacteriol. 187:2715-2726(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 9-941.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017223 Genomic DNA. Translation: AAX75201.1.
RefSeqYP_222562.1. NC_006932.1.

3D structure databases

ProteinModelPortalQ57AY3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING262698.BruAb1_1891.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAX75201; AAX75201; BruAb1_1891.
GeneID3340913.
KEGGbmb:BruAb1_1891.
PATRIC17825610. VBIBruAbo15061_1998.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0806.
HOGENOMHOG000220989.
KOK02860.
OMAKSHGIRG.
OrthoDBEOG6SBT2K.
ProtClustDBPRK00122.

Enzyme and pathway databases

BioCycBABO262698:GJC2-1938-MONOMER.

Family and domain databases

Gene3D2.40.30.60. 1 hit.
HAMAPMF_00014. Ribosome_mat_RimM.
InterProIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_BRUAB
AccessionPrimary (citable) accession number: Q57AY3
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 10, 2005
Last modified: February 19, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Brucella abortus strain 9-941

Brucella abortus (strain 9-941): entries and gene names