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Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Brucella abortus biovar 1 (strain 9-941)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

GO - Molecular functioni

  1. ribosome binding Source: InterPro

GO - Biological processi

  1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
  2. rRNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciBABO262698:GJC2-1938-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimMUniRule annotation
Gene namesi
Name:rimMUniRule annotation
Ordered Locus Names:BruAb1_1891
OrganismiBrucella abortus biovar 1 (strain 9-941)
Taxonomic identifieri262698 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000540: Chromosome I

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. ribosome Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 189189Ribosome maturation factor RimMPRO_0000244114Add
BLAST

Interactioni

Subunit structurei

Binds ribosomal protein S19.UniRule annotation

Protein-protein interaction databases

STRINGi262698.BruAb1_1891.

Structurei

3D structure databases

ProteinModelPortaliQ57AY3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini96 – 16974PRC barrelUniRule annotationAdd
BLAST

Domaini

The PRC barrel domain binds ribosomal protein S19.UniRule annotation

Sequence similaritiesi

Belongs to the RimM family.UniRule annotation
Contains 1 PRC barrel domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiPDEFHDH.
OrthoDBiEOG6SBT2K.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q57AY3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRPENPIQL AVIGAAHGTR GEVRVKTFTG DPLAIADYGL LYDEQGKAYE
60 70 80 90 100
ILEARVAKTV VIVRFKGVND RNAAEALNGT ELFIDRSQLP DEELDEDEFF
110 120 130 140 150
QTDLIGLEAV DGDGKSYGVV SAIFDFGGGD LIELSEKGKR PMLIPFTEAA
160 170 180
VPEIDFDKGI IKVEPHAAGL IADEHDNPPH ESGKKPKKP
Length:189
Mass (Da):20,554
Last modified:May 10, 2005 - v1
Checksum:i81FB87E6A60D690E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017223 Genomic DNA. Translation: AAX75201.1.
RefSeqiYP_222562.1. NC_006932.1.

Genome annotation databases

EnsemblBacteriaiAAX75201; AAX75201; BruAb1_1891.
GeneIDi3340913.
KEGGibmb:BruAb1_1891.
PATRICi17825610. VBIBruAbo15061_1998.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017223 Genomic DNA. Translation: AAX75201.1.
RefSeqiYP_222562.1. NC_006932.1.

3D structure databases

ProteinModelPortaliQ57AY3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262698.BruAb1_1891.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAX75201; AAX75201; BruAb1_1891.
GeneIDi3340913.
KEGGibmb:BruAb1_1891.
PATRICi17825610. VBIBruAbo15061_1998.

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiPDEFHDH.
OrthoDBiEOG6SBT2K.

Enzyme and pathway databases

BioCyciBABO262698:GJC2-1938-MONOMER.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis."
    Halling S.M., Peterson-Burch B.D., Bricker B.J., Zuerner R.L., Qing Z., Li L.-L., Kapur V., Alt D.P., Olsen S.C.
    J. Bacteriol. 187:2715-2726(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 9-941.

Entry informationi

Entry nameiRIMM_BRUAB
AccessioniPrimary (citable) accession number: Q57AY3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 10, 2005
Last modified: January 7, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella abortus strain 9-941
    Brucella abortus (strain 9-941): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.