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Q57AY3

- RIMM_BRUAB

UniProt

Q57AY3 - RIMM_BRUAB

Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Brucella abortus biovar 1 (strain 9-941)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

    GO - Molecular functioni

    1. ribosome binding Source: InterPro

    GO - Biological processi

    1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
    2. rRNA processing Source: InterPro

    Keywords - Molecular functioni

    Chaperone

    Keywords - Biological processi

    Ribosome biogenesis

    Enzyme and pathway databases

    BioCyciBABO262698:GJC2-1938-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome maturation factor RimMUniRule annotation
    Gene namesi
    Name:rimMUniRule annotation
    Ordered Locus Names:BruAb1_1891
    OrganismiBrucella abortus biovar 1 (strain 9-941)
    Taxonomic identifieri262698 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000000540: Chromosome I

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. ribosome Source: InterPro

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 189189Ribosome maturation factor RimMPRO_0000244114Add
    BLAST

    Interactioni

    Subunit structurei

    Binds ribosomal protein S19.UniRule annotation

    Protein-protein interaction databases

    STRINGi262698.BruAb1_1891.

    Structurei

    3D structure databases

    ProteinModelPortaliQ57AY3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini96 – 16974PRC barrelUniRule annotationAdd
    BLAST

    Domaini

    The PRC barrel domain binds ribosomal protein S19.UniRule annotation

    Sequence similaritiesi

    Belongs to the RimM family.UniRule annotation
    Contains 1 PRC barrel domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0806.
    HOGENOMiHOG000220989.
    KOiK02860.
    OMAiHNHGAGD.
    OrthoDBiEOG6SBT2K.

    Family and domain databases

    Gene3Di2.40.30.60. 1 hit.
    HAMAPiMF_00014. Ribosome_mat_RimM.
    InterProiIPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PfamiPF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view]
    SUPFAMiSSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q57AY3-1 [UniParc]FASTAAdd to Basket

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    MPRPENPIQL AVIGAAHGTR GEVRVKTFTG DPLAIADYGL LYDEQGKAYE    50
    ILEARVAKTV VIVRFKGVND RNAAEALNGT ELFIDRSQLP DEELDEDEFF 100
    QTDLIGLEAV DGDGKSYGVV SAIFDFGGGD LIELSEKGKR PMLIPFTEAA 150
    VPEIDFDKGI IKVEPHAAGL IADEHDNPPH ESGKKPKKP 189
    Length:189
    Mass (Da):20,554
    Last modified:May 10, 2005 - v1
    Checksum:i81FB87E6A60D690E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017223 Genomic DNA. Translation: AAX75201.1.
    RefSeqiYP_222562.1. NC_006932.1.

    Genome annotation databases

    EnsemblBacteriaiAAX75201; AAX75201; BruAb1_1891.
    GeneIDi3340913.
    KEGGibmb:BruAb1_1891.
    PATRICi17825610. VBIBruAbo15061_1998.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017223 Genomic DNA. Translation: AAX75201.1 .
    RefSeqi YP_222562.1. NC_006932.1.

    3D structure databases

    ProteinModelPortali Q57AY3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262698.BruAb1_1891.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAX75201 ; AAX75201 ; BruAb1_1891 .
    GeneIDi 3340913.
    KEGGi bmb:BruAb1_1891.
    PATRICi 17825610. VBIBruAbo15061_1998.

    Phylogenomic databases

    eggNOGi COG0806.
    HOGENOMi HOG000220989.
    KOi K02860.
    OMAi HNHGAGD.
    OrthoDBi EOG6SBT2K.

    Enzyme and pathway databases

    BioCyci BABO262698:GJC2-1938-MONOMER.

    Family and domain databases

    Gene3Di 2.40.30.60. 1 hit.
    HAMAPi MF_00014. Ribosome_mat_RimM.
    InterProi IPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    Pfami PF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR02273. 16S_RimM. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis."
      Halling S.M., Peterson-Burch B.D., Bricker B.J., Zuerner R.L., Qing Z., Li L.-L., Kapur V., Alt D.P., Olsen S.C.
      J. Bacteriol. 187:2715-2726(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 9-941.

    Entry informationi

    Entry nameiRIMM_BRUAB
    AccessioniPrimary (citable) accession number: Q57AY3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Brucella abortus strain 9-941
      Brucella abortus (strain 9-941): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3