Q57AY3 (RIMM_BRUAB) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor RimM

Gene names

Name:	rimM
Ordered Locus Names:	BruAb1_1891

Organism

Brucella abortus biovar 1 (strain 9-941) [Complete proteome] [HAMAP]

Taxonomic identifier

262698 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Brucellaceae › Brucella › Brucella abortus › Brucella abortus bv. 1

Protein attributes

Sequence length	189 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP-Rule MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014
Sequence similarities	Belongs to the RimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	rRNA processing Inferred from electronic annotation. Source: InterPro ribosomal small subunit biogenesis Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular_function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 189	189	Ribosome maturation factor RimM HAMAP-Rule MF_00014		PRO_0000244114
Regions
	Domain	96 – 169	74	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	Q57AY3 [UniParc]. Last modified May 10, 2005. Version 1. Checksum: 81FB87E6A60D690E	FASTA	189	20,554
	10 20 30 40 50 60 MPRPENPIQL AVIGAAHGTR GEVRVKTFTG DPLAIADYGL LYDEQGKAYE ILEARVAKTV 70 80 90 100 110 120 VIVRFKGVND RNAAEALNGT ELFIDRSQLP DEELDEDEFF QTDLIGLEAV DGDGKSYGVV 130 140 150 160 170 180 SAIFDFGGGD LIELSEKGKR PMLIPFTEAA VPEIDFDKGI IKVEPHAAGL IADEHDNPPH ESGKKPKKP

References

[1]

"Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis." Halling S.M., Peterson-Burch B.D., Bricker B.J., Zuerner R.L., Qing Z., Li L.-L., Kapur V., Alt D.P., Olsen S.C. J. Bacteriol. 187:2715-2726(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 9-941.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017223 Genomic DNA. Translation: AAX75201.1.
RefSeq	YP_222562.1. NC_006932.1.
3D structure databases
ProteinModelPortal	Q57AY3.
ModBase	Search...
Protein-protein interaction databases
STRING	262698.BruAb1_1891.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAX75201; AAX75201; BruAb1_1891.
GeneID	3340913.
KEGG	bmb:BruAb1_1891.
PATRIC	17825610. VBIBruAbo15061_1998.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0806.
HOGENOM	HOG000220989.
KO	K02860.
OMA	DEFYDHE.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	BABO262698:GJC2-1938-MONOMER.
Family and domain databases
Gene3D	2.40.30.60. 1 hit.
HAMAP	MF_00014. Ribosome_mat_RimM.
InterPro	IPR011961. 16S_RimM. IPR027275. PRC-brl_dom. IPR011033. PRC_barrel-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_BRUAB

Accession

Primary (citable) accession number: Q57AY3

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2006
Last sequence update:	May 10, 2005
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program