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Protein

DNA-directed RNA polymerase subunit L

Gene

rpoL

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.By similarity

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit L (EC:2.7.7.6)
Gene namesi
Name:rpoL
Ordered Locus Names:MJ0387
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9999DNA-directed RNA polymerase subunit LPRO_0000149326Add
BLAST

Proteomic databases

PRIDEiQ57832.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
rpoDQ576483EBI-2567038,EBI-2567023

Protein-protein interaction databases

IntActiQ57832. 1 interaction.
STRINGi243232.MJ_0387.

Structurei

3D structure databases

ProteinModelPortaliQ57832.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1761.
InParanoidiQ57832.
KOiK03056.
OMAiKVATYDI.
PhylomeDBiQ57832.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q57832-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIKILERKD NLVEIELINE DHSLPNLLKD ILLTKEGVKM ASYSIDHPLL
60 70 80 90
HPETGRYISN PKITIITEEG TDPLEVLKEG LRDIIKMCDT LLDELKEKK
Length:99
Mass (Da):11,392
Last modified:November 1, 1997 - v1
Checksum:i0C25307DDF5EE909
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98373.1.
PIRiC64348.
RefSeqiNP_247361.1. NC_000909.1.
WP_010869886.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB98373; AAB98373; MJ_0387.
GeneIDi1451244.
KEGGimja:MJ_0387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98373.1.
PIRiC64348.
RefSeqiNP_247361.1. NC_000909.1.
WP_010869886.1. NC_000909.1.

3D structure databases

ProteinModelPortaliQ57832.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ57832. 1 interaction.
STRINGi243232.MJ_0387.

Proteomic databases

PRIDEiQ57832.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB98373; AAB98373; MJ_0387.
GeneIDi1451244.
KEGGimja:MJ_0387.

Phylogenomic databases

eggNOGiCOG1761.
InParanoidiQ57832.
KOiK03056.
OMAiKVATYDI.
PhylomeDBiQ57832.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiRPOL_METJA
AccessioniPrimary (citable) accession number: Q57832
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.