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Q57648 (RPOD_METJA) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 93. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase subunit D

EC=2.7.7.6
Gene names
Name:rpoD
Ordered Locus Names:MJ0192
OrganismMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) [Reference proteome] [HAMAP]
Taxonomic identifier243232 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus

Protein attributes

Sequence length191 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP-Rule MF_00320

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP-Rule MF_00320

Sequence similarities

Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.

Ontologies

Keywords
   Biological processTranscription
   Cellular componentDNA-directed RNA polymerase
   Molecular functionNucleotidyltransferase
Transferase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranscription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentDNA-directed RNA polymerase complex

Inferred from Biological aspect of Ancestor. Source: RefGenome

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

DNA-directed RNA polymerase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Binary interactions

With

Entry

#Exp.

IntAct

Notes

rpoLQ578323EBI-2567023,EBI-2567038

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 191191DNA-directed RNA polymerase subunit D HAMAP-Rule MF_00320
PRO_0000132754

Sequences

Sequence LengthMass (Da)Tools
Q57648 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 3F5B96CA0D242A96

FASTA19121,699
        10         20         30         40         50         60 
MITIKEKRKT RIGEEFIFSL KAPISFSNAI RRIMISEVPT FAIEDVYIYE NSSSMDDEIL 

        70         80         90        100        110        120 
AHRLGLIPIK GKPLLENEVI TFTLEKEGPC TVYSSDLKSE NGEVAFKNIP IVKLGKGQRI 

       130        140        150        160        170        180 
QIECEAIPGI GKVHAKWQPC NAVYKQIADD EVEFFVETFG QMEAEEILEE AVKILKNKAE 

       190 
SFLQQLEMIE Q 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L77117 Genomic DNA. Translation: AAB98172.1.
PIRA64324.
RefSeqNP_247160.1. NC_000909.1.

3D structure databases

ProteinModelPortalQ57648.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ57648. 3 interactions.
STRING243232.MJ0192.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB98172; AAB98172; MJ_0192.
GeneID1451040.
KEGGmja:MJ_0192.

Phylogenomic databases

eggNOGCOG0202.
KOK03047.
OMAHAKWQPC.
ProtClustDBPRK14979.

Family and domain databases

Gene3D2.170.120.12. 1 hit.
HAMAPMF_00320. RNApol_arch_D.
InterProIPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR009025. RBP11-like_dimer.
IPR022842. RNAP_D.
[Graphical view]
PfamPF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
[Graphical view]
SMARTSM00662. RPOLD. 1 hit.
[Graphical view]
SUPFAMSSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEPS00446. RNA_POL_D_30KD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRPOD_METJA
AccessionPrimary (citable) accession number: Q57648
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Methanococcus jannaschii

Methanococcus jannaschii: entries and gene names