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Q57648

- RPOD_METJA

UniProt

Q57648 - RPOD_METJA

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Protein
DNA-directed RNA polymerase subunit D
Gene
rpoD, MJ0192
Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
  3. protein binding Source: IntAct

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
Gene namesi
Name:rpoD
Ordered Locus Names:MJ0192
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. DNA-directed RNA polymerase complex Source: RefGenome
Complete GO annotation...

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 191191DNA-directed RNA polymerase subunit DUniRule annotation
PRO_0000132754Add
BLAST

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
rpoLQ578323EBI-2567023,EBI-2567038

Protein-protein interaction databases

IntActiQ57648. 3 interactions.
STRINGi243232.MJ0192.

Structurei

3D structure databases

ProteinModelPortaliQ57648.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0202.
KOiK03047.
OMAiHAKWQPC.
PhylomeDBiQ57648.

Family and domain databases

Gene3Di2.170.120.12. 1 hit.
HAMAPiMF_00320. RNApol_arch_D.
InterProiIPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR009025. RBP11-like_dimer.
IPR022842. RNAP_D.
[Graphical view]
PfamiPF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
[Graphical view]
SMARTiSM00662. RPOLD. 1 hit.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEiPS00446. RNA_POL_D_30KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q57648-1 [UniParc]FASTAAdd to Basket

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MITIKEKRKT RIGEEFIFSL KAPISFSNAI RRIMISEVPT FAIEDVYIYE    50
NSSSMDDEIL AHRLGLIPIK GKPLLENEVI TFTLEKEGPC TVYSSDLKSE 100
NGEVAFKNIP IVKLGKGQRI QIECEAIPGI GKVHAKWQPC NAVYKQIADD 150
EVEFFVETFG QMEAEEILEE AVKILKNKAE SFLQQLEMIE Q 191
Length:191
Mass (Da):21,699
Last modified:November 1, 1997 - v1
Checksum:i3F5B96CA0D242A96
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB98172.1.
PIRiA64324.
RefSeqiNP_247160.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB98172; AAB98172; MJ_0192.
GeneIDi1451040.
KEGGimja:MJ_0192.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB98172.1 .
PIRi A64324.
RefSeqi NP_247160.1. NC_000909.1.

3D structure databases

ProteinModelPortali Q57648.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q57648. 3 interactions.
STRINGi 243232.MJ0192.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB98172 ; AAB98172 ; MJ_0192 .
GeneIDi 1451040.
KEGGi mja:MJ_0192.

Phylogenomic databases

eggNOGi COG0202.
KOi K03047.
OMAi HAKWQPC.
PhylomeDBi Q57648.

Family and domain databases

Gene3Di 2.170.120.12. 1 hit.
HAMAPi MF_00320. RNApol_arch_D.
InterProi IPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR009025. RBP11-like_dimer.
IPR022842. RNAP_D.
[Graphical view ]
Pfami PF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
[Graphical view ]
SMARTi SM00662. RPOLD. 1 hit.
[Graphical view ]
SUPFAMi SSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEi PS00446. RNA_POL_D_30KD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiRPOD_METJA
AccessioniPrimary (citable) accession number: Q57648
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi