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Q57648

- RPOD_METJA

UniProt

Q57648 - RPOD_METJA

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Protein

DNA-directed RNA polymerase subunit D

Gene

rpoD

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.By similarity

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
Gene namesi
Name:rpoD
Ordered Locus Names:MJ0192
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. DNA-directed RNA polymerase complex Source: RefGenome
Complete GO annotation...

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 191191DNA-directed RNA polymerase subunit DPRO_0000132754Add
BLAST

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
rpoLQ578323EBI-2567023,EBI-2567038

Protein-protein interaction databases

IntActiQ57648. 3 interactions.
STRINGi243232.MJ0192.

Structurei

3D structure databases

ProteinModelPortaliQ57648.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0202.
InParanoidiQ57648.
KOiK03047.
OMAiHAKWQPC.
PhylomeDBiQ57648.

Family and domain databases

Gene3Di2.170.120.12. 1 hit.
HAMAPiMF_00320. RNApol_arch_D.
InterProiIPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR009025. RBP11-like_dimer.
IPR022842. RNAP_D.
[Graphical view]
PfamiPF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
[Graphical view]
SMARTiSM00662. RPOLD. 1 hit.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEiPS00446. RNA_POL_D_30KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q57648-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MITIKEKRKT RIGEEFIFSL KAPISFSNAI RRIMISEVPT FAIEDVYIYE
60 70 80 90 100
NSSSMDDEIL AHRLGLIPIK GKPLLENEVI TFTLEKEGPC TVYSSDLKSE
110 120 130 140 150
NGEVAFKNIP IVKLGKGQRI QIECEAIPGI GKVHAKWQPC NAVYKQIADD
160 170 180 190
EVEFFVETFG QMEAEEILEE AVKILKNKAE SFLQQLEMIE Q
Length:191
Mass (Da):21,699
Last modified:November 1, 1997 - v1
Checksum:i3F5B96CA0D242A96
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB98172.1.
PIRiA64324.
RefSeqiNP_247160.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB98172; AAB98172; MJ_0192.
GeneIDi1451040.
KEGGimja:MJ_0192.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB98172.1 .
PIRi A64324.
RefSeqi NP_247160.1. NC_000909.1.

3D structure databases

ProteinModelPortali Q57648.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q57648. 3 interactions.
STRINGi 243232.MJ0192.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB98172 ; AAB98172 ; MJ_0192 .
GeneIDi 1451040.
KEGGi mja:MJ_0192.

Phylogenomic databases

eggNOGi COG0202.
InParanoidi Q57648.
KOi K03047.
OMAi HAKWQPC.
PhylomeDBi Q57648.

Family and domain databases

Gene3Di 2.170.120.12. 1 hit.
HAMAPi MF_00320. RNApol_arch_D.
InterProi IPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR009025. RBP11-like_dimer.
IPR022842. RNAP_D.
[Graphical view ]
Pfami PF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
[Graphical view ]
SMARTi SM00662. RPOLD. 1 hit.
[Graphical view ]
SUPFAMi SSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEi PS00446. RNA_POL_D_30KD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiRPOD_METJA
AccessioniPrimary (citable) accession number: Q57648
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 29, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3