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Q57648

- RPOD_METJA

UniProt

Q57648 - RPOD_METJA

Protein

DNA-directed RNA polymerase subunit D

Gene

rpoD

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 97 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.By similarity

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
    3. protein binding Source: IntAct

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
    Gene namesi
    Name:rpoD
    Ordered Locus Names:MJ0192
    OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
    Taxonomic identifieri243232 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
    ProteomesiUP000000805: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. DNA-directed RNA polymerase complex Source: RefGenome

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 191191DNA-directed RNA polymerase subunit DPRO_0000132754Add
    BLAST

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    rpoLQ578323EBI-2567023,EBI-2567038

    Protein-protein interaction databases

    IntActiQ57648. 3 interactions.
    STRINGi243232.MJ0192.

    Structurei

    3D structure databases

    ProteinModelPortaliQ57648.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG0202.
    KOiK03047.
    OMAiHAKWQPC.
    PhylomeDBiQ57648.

    Family and domain databases

    Gene3Di2.170.120.12. 1 hit.
    HAMAPiMF_00320. RNApol_arch_D.
    InterProiIPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
    IPR011262. DNA-dir_RNA_pol_insert.
    IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
    IPR009025. RBP11-like_dimer.
    IPR022842. RNAP_D.
    [Graphical view]
    PfamiPF01000. RNA_pol_A_bac. 1 hit.
    PF01193. RNA_pol_L. 1 hit.
    [Graphical view]
    SMARTiSM00662. RPOLD. 1 hit.
    [Graphical view]
    SUPFAMiSSF55257. SSF55257. 2 hits.
    SSF56553. SSF56553. 1 hit.
    PROSITEiPS00446. RNA_POL_D_30KD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q57648-1 [UniParc]FASTAAdd to Basket

    « Hide

    MITIKEKRKT RIGEEFIFSL KAPISFSNAI RRIMISEVPT FAIEDVYIYE    50
    NSSSMDDEIL AHRLGLIPIK GKPLLENEVI TFTLEKEGPC TVYSSDLKSE 100
    NGEVAFKNIP IVKLGKGQRI QIECEAIPGI GKVHAKWQPC NAVYKQIADD 150
    EVEFFVETFG QMEAEEILEE AVKILKNKAE SFLQQLEMIE Q 191
    Length:191
    Mass (Da):21,699
    Last modified:November 1, 1997 - v1
    Checksum:i3F5B96CA0D242A96
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB98172.1.
    PIRiA64324.
    RefSeqiNP_247160.1. NC_000909.1.

    Genome annotation databases

    EnsemblBacteriaiAAB98172; AAB98172; MJ_0192.
    GeneIDi1451040.
    KEGGimja:MJ_0192.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB98172.1 .
    PIRi A64324.
    RefSeqi NP_247160.1. NC_000909.1.

    3D structure databases

    ProteinModelPortali Q57648.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q57648. 3 interactions.
    STRINGi 243232.MJ0192.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB98172 ; AAB98172 ; MJ_0192 .
    GeneIDi 1451040.
    KEGGi mja:MJ_0192.

    Phylogenomic databases

    eggNOGi COG0202.
    KOi K03047.
    OMAi HAKWQPC.
    PhylomeDBi Q57648.

    Family and domain databases

    Gene3Di 2.170.120.12. 1 hit.
    HAMAPi MF_00320. RNApol_arch_D.
    InterProi IPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
    IPR011262. DNA-dir_RNA_pol_insert.
    IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
    IPR009025. RBP11-like_dimer.
    IPR022842. RNAP_D.
    [Graphical view ]
    Pfami PF01000. RNA_pol_A_bac. 1 hit.
    PF01193. RNA_pol_L. 1 hit.
    [Graphical view ]
    SMARTi SM00662. RPOLD. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55257. SSF55257. 2 hits.
    SSF56553. SSF56553. 1 hit.
    PROSITEi PS00446. RNA_POL_D_30KD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

    Entry informationi

    Entry nameiRPOD_METJA
    AccessioniPrimary (citable) accession number: Q57648
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 97 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Methanococcus jannaschii
      Methanococcus jannaschii: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3