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Protein
Submitted name:

CDP-D-glucose-4,6-dehydratase

Gene

ascB

Organism
Yersinia pseudotuberculosis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei41 – 411NAD; via amide nitrogen and carbonyl oxygenCombined sources
Binding sitei161 – 1611NADCombined sources
Binding sitei196 – 1961NAD; via amide nitrogenCombined sources
Binding sitei206 – 2061NADCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi16 – 216NADCombined sources
Nucleotide bindingi65 – 662NADCombined sources
Nucleotide bindingi87 – 893NADCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

NADCombined sources, Nucleotide-bindingCombined sources

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-13776.

Names & Taxonomyi

Protein namesi
Submitted name:
CDP-D-glucose-4,6-dehydrataseImported
Submitted name:
CDP-glucose 4,6-dehydrataseImported (EC:4.2.1.45Imported)
Gene namesi
Name:ascBImported
Synonyms:ddhBImported
ORF Names:ERS008480_02431Imported
OrganismiYersinia pseudotuberculosisImported
Taxonomic identifieri633 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
Proteomesi
  • UP000041971 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RKXX-ray1.80A/B/C/D1-357[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini13 – 327315NAD(P)-bd_domInterPro annotationAdd
BLAST

Phylogenomic databases

KOiK01709.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR013445. CDP_4_6_deHydtase.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF16363. GDP_Man_Dehyd. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR02622. CDP_4_6_dhtase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q57329-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINNSFWQGK RVFVTGHTGF KGGWLSLWLQ TMGATVKGYS LTAPTVPSLF
60 70 80 90 100
ETARVADGMQ SEIGDIRDQN KLLESIREFQ PEIVFHMAAQ PLVRLSYSEP
110 120 130 140 150
VETYSTNVMG TVYLLEAIRH VGGVKAVVNI TSDKCYDNKE WIWGYRENEA
160 170 180 190 200
MGGYDPYSNS KGCAELVTSS YRNSFFNPAN YGQHGTAVAT VRAGNVIGGG
210 220 230 240 250
DWALDRIVPD ILRAFEQSQP VIIRNPHAIR PWQHVLEPLS GYLLLAQKLY
260 270 280 290 300
TDGAEYAEGW NFGPNDADAT PVKNIVEQMV KYWGEGASWQ LDGNAHPHEA
310 320 330 340 350
HYLKLDCSKA KMQLGWHPRW NLNTTLEYIV GWHKNWLSGT DMHEYSITEI

NNYMNTK
Length:357
Mass (Da):40,273
Last modified:November 1, 1996 - v1
Checksum:i5B19BE8078C9D253
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L33181 Genomic DNA. Translation: AAA88700.1.
CPWG01000015 Genomic DNA. Translation: CNC69406.1.

Genome annotation databases

EnsemblBacteriaiCRG49449; CRG49449; ERS008478_00974.
KEGGiypc:BZ23_519.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L33181 Genomic DNA. Translation: AAA88700.1.
CPWG01000015 Genomic DNA. Translation: CNC69406.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RKXX-ray1.80A/B/C/D1-357[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCRG49449; CRG49449; ERS008478_00974.
KEGGiypc:BZ23_519.

Phylogenomic databases

KOiK01709.

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-13776.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR013445. CDP_4_6_deHydtase.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF16363. GDP_Man_Dehyd. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR02622. CDP_4_6_dhtase. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Studies of the biosynthesis of 3,6-dideoxyhexoses: molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA."
    Thorson J.S., Lo S.F., Ploux O., He X., Liu H.W.
    J. Bacteriol. 176:5483-5493(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: VAImported.
  2. Saken E.M.
    Submitted (JAN-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: VAImported.
  3. "Crystal structure at 1.8 A resolution of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis."
    Vogan E.M., Bellamacina C., He X., Liu H.W., Ringe D., Petsko G.A.
    Biochemistry 43:3057-3067(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH NAD.
  4. Murphy D.
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y428Imported.

Entry informationi

Entry nameiQ57329_YERPU
AccessioniPrimary (citable) accession number: Q57329
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.