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Protein
Submitted name:

Putative type III secretion protein

Gene

yscU

Organism
Yersinia enterocolitica
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Protein family/group databases

MEROPSiN06.001.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative type III secretion proteinImported
Submitted name:
YscUImported
Gene namesi
Name:yscUImported
Synonyms:yscU_1Imported, yscU_2Imported
ORF Names:ERS008640_01397Imported, ERS008651_03326Imported, ERS008656_03445Imported, ERS008660_02986Imported
Encoded oniPlasmid pYVe227Imported
OrganismiYersinia enterocoliticaImported
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei29 – 5022HelicalSequence analysisAdd
BLAST
Transmembranei83 – 11028HelicalSequence analysisAdd
BLAST
Transmembranei140 – 15819HelicalSequence analysisAdd
BLAST
Transmembranei187 – 20822HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2V5GX-ray2.00A211-354[»]
2W0RX-ray1.55A211-354[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

KOiK03229.

Family and domain databases

Gene3Di3.40.1690.10. 1 hit.
InterProiIPR006307. BsaZ.
IPR006135. T3SS_substrate_exporter.
IPR029025. T3SS_substrate_exporter_C.
[Graphical view]
PANTHERiPTHR30531. PTHR30531. 1 hit.
PfamiPF01312. Bac_export_2. 1 hit.
[Graphical view]
PRINTSiPR00950. TYPE3IMSPROT.
SUPFAMiSSF160544. SSF160544. 1 hit.
TIGRFAMsiTIGR01404. FlhB_rel_III. 1 hit.

Sequencei

Sequence statusi: Complete.

Q56844-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGEKTEQPT PKKIRDARKK GQVAKSKEVV STTLIVALSA MLMGLSDYYF
60 70 80 90 100
EHLSRLMLIP AEQSYLPFSQ ALSYVVDNVL LEFFYLCFPL LTVAALMAIA
110 120 130 140 150
SHVVQYGFLI SGEAIKPDIK KINPIEGAKR IFSIKSLVEF LKSILKVVLL
160 170 180 190 200
SILIWIIIKG NLVTLLQLPT CGIECITPLL GQILRQLMVI CTVGFVVISI
210 220 230 240 250
ADYAFEYYQY IKELKMSKDE IKREYKEMEG SPEIKSKRRQ FHQEIQSGNM
260 270 280 290 300
RENVKRSSVV VANPTHIAIG ILYKRGETPL PLVTFKYTDA QVQTVRKIAE
310 320 330 340 350
EEGVPILQRI PLARALYWDA LVDHYIPAEQ IEATAEVLRW LERQNIEKQH

SEML
Length:354
Mass (Da):40,307
Last modified:November 1, 1996 - v1
Checksum:i0F4D709DF2FCB9D4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF102990 Genomic DNA. Translation: AAD16831.1.
CWHT01000046 Genomic DNA. Translation: CRX71983.1.
CWIT01000040 Genomic DNA. Translation: CRX94202.1.
CWIW01000041 Genomic DNA. Translation: CRY24101.1.
CWIX01000064 Genomic DNA. Translation: CRY32005.1.
RefSeqiNP_052408.1. NC_002120.1.
WP_010891221.1. NZ_KN150737.1.

Genome annotation databases

EnsemblBacteriaiAJJ25626; AJJ25626; CH48_4204.
CRX71983; CRX71983; ERS008640_01397.
CRX94202; CRX94202; ERS008651_03326.
CRY24101; CRY24101; ERS008660_02986.
CRY32005; CRY32005; ERS008656_03445.
GeneIDi1239139.
KEGGipg:1239139.
yet:CH48_4204.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF102990 Genomic DNA. Translation: AAD16831.1.
CWHT01000046 Genomic DNA. Translation: CRX71983.1.
CWIT01000040 Genomic DNA. Translation: CRX94202.1.
CWIW01000041 Genomic DNA. Translation: CRY24101.1.
CWIX01000064 Genomic DNA. Translation: CRY32005.1.
RefSeqiNP_052408.1. NC_002120.1.
WP_010891221.1. NZ_KN150737.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2V5GX-ray2.00A211-354[»]
2W0RX-ray1.55A211-354[»]
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

MEROPSiN06.001.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAJJ25626; AJJ25626; CH48_4204.
CRX71983; CRX71983; ERS008640_01397.
CRX94202; CRX94202; ERS008651_03326.
CRY24101; CRY24101; ERS008660_02986.
CRY32005; CRY32005; ERS008656_03445.
GeneIDi1239139.
KEGGipg:1239139.
yet:CH48_4204.

Phylogenomic databases

KOiK03229.

Family and domain databases

Gene3Di3.40.1690.10. 1 hit.
InterProiIPR006307. BsaZ.
IPR006135. T3SS_substrate_exporter.
IPR029025. T3SS_substrate_exporter_C.
[Graphical view]
PANTHERiPTHR30531. PTHR30531. 1 hit.
PfamiPF01312. Bac_export_2. 1 hit.
[Graphical view]
PRINTSiPR00950. TYPE3IMSPROT.
SUPFAMiSSF160544. SSF160544. 1 hit.
TIGRFAMsiTIGR01404. FlhB_rel_III. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "YscU, a Yersinia enterocolitica inner membrane protein involved in Yop secretion."
    Allaoui A., Woestyn S., Sluiters C., Cornelis G.R.
    J. Bacteriol. 176:4534-4542(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: W22703Imported.
    Plasmid: pYVe227
  2. "Detailed genetic map of the pYVe227 plasmid of Yersinia enterocolitica serotype O:9."
    Iriarte M., Lambermont I., Kerbourch C., Cornelis G.R.
    Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: W22703Imported.
    Plasmid: pYVe227
  3. "Structure of the type III secretion recognition protein YscU from Yersinia enterocolitica."
    Wiesand U., Sorg I., Amstutz M., Wagner S., van den Heuvel J., Luhrs T., Cornelis G.R., Heinz D.W.
    J. Mol. Biol. 385:854-866(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) OF 211-354.
  4. Informatics Pathogen
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: H450/87Imported, H469/87Imported, H582/87Imported and H608/87Imported.

Entry informationi

Entry nameiQ56844_YEREN
AccessioniPrimary (citable) accession number: Q56844
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.