Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Stx6 protein

Gene

stx6

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Stx6 proteinImported
Submitted name:
Syntaxin 6Imported
Gene namesi
Name:stx6Imported
Synonyms:si:dkey-121a11.2Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-030131-858. stx6.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei236 – 25520HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000062726.

Structurei

3D structure databases

SMRiQ567Y3. Positions 4-108, 171-233.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini164 – 22663T-SNARE coiled-coil homologyInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the syntaxin family.SAAS annotation
Contains t-SNARE coiled-coil homology domain.SAAS annotation

Keywords - Domaini

Coiled coilSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3202. Eukaryota.
ENOG410ZZA3. LUCA.
HOVERGENiHBG007194.
KOiK08498.
OrthoDBiEOG7JHM7F.
PhylomeDBiQ567Y3.
TreeFamiTF313254.

Family and domain databases

InterProiIPR015260. Syntaxin-6_N.
IPR006012. Syntaxin/epimorphin_CS.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
PF09177. Syntaxin-6_N. 1 hit.
[Graphical view]
SMARTiSM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 1 hit.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q567Y3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMEDPFFVV KGEVQKAVNT AQGLHQRWIE LLQDAGGASK EEVDWTTNEL
60 70 80 90 100
RNSLRSIEWD LEDLDETISI VEANPKKFNL DAMELAKRKA FITSTRQTVR
110 120 130 140 150
EMKDHMTSPM AITVPEKKNR QTLMGEGGSR GPIWQPSGEK YTRLDNELQT
160 170 180 190 200
ANSQFIEEQQ TQQQLIAEKQ DEHLELVSGT IGVLKNMSQR IGQELDEQAV
210 220 230 240 250
MLDDFSHEMD STQSRLDNVM KKLAKVSHMT SDKRQWCAIG VLLAILFVVI

LLFIIL
Length:256
Mass (Da):29,177
Last modified:May 10, 2005 - v1
Checksum:iE6FF85555582E347
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC092969 mRNA. Translation: AAH92969.1.
BC158193 mRNA. Translation: AAI58194.1.
BC165503 mRNA. Translation: AAI65503.1.
RefSeqiNP_001017879.1. NM_001017879.1.
UniGeneiDr.75422.

Genome annotation databases

GeneIDi550577.
KEGGidre:550577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC092969 mRNA. Translation: AAH92969.1.
BC158193 mRNA. Translation: AAI58194.1.
BC165503 mRNA. Translation: AAI65503.1.
RefSeqiNP_001017879.1. NM_001017879.1.
UniGeneiDr.75422.

3D structure databases

SMRiQ567Y3. Positions 4-108, 171-233.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000062726.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi550577.
KEGGidre:550577.

Organism-specific databases

CTDi10228.
ZFINiZDB-GENE-030131-858. stx6.

Phylogenomic databases

eggNOGiKOG3202. Eukaryota.
ENOG410ZZA3. LUCA.
HOVERGENiHBG007194.
KOiK08498.
OrthoDBiEOG7JHM7F.
PhylomeDBiQ567Y3.
TreeFamiTF313254.

Miscellaneous databases

NextBioi20879815.

Family and domain databases

InterProiIPR015260. Syntaxin-6_N.
IPR006012. Syntaxin/epimorphin_CS.
IPR010989. t-SNARE.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF05739. SNARE. 1 hit.
PF09177. Syntaxin-6_N. 1 hit.
[Graphical view]
SMARTiSM00397. t_SNARE. 1 hit.
[Graphical view]
SUPFAMiSSF47661. SSF47661. 1 hit.
PROSITEiPS00914. SYNTAXIN. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Singapore local strainImported.
    Tissue: EmbryoImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Olfactory epitheliumImported.
  3. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ567Y3_DANRE
AccessioniPrimary (citable) accession number: Q567Y3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: May 11, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.