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Protein

Sorting nexin-30

Gene

snx30

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in several stages of intracellular trafficking.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Sorting nexin-30
Gene namesi
Name:snx30
ORF Names:zgc:112424
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Unplaced

Organism-specific databases

ZFINiZDB-GENE-050417-330. snx30.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002845351 – 430Sorting nexin-30Add BLAST430

Proteomic databases

PaxDbiQ566W7.
PRIDEiQ566W7.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000050176.

Structurei

3D structure databases

ProteinModelPortaliQ566W7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini80 – 201PXPROSITE-ProRule annotationAdd BLAST122

Sequence similaritiesi

Belongs to the sorting nexin family.Curated
Contains 1 PX (phox homology) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2273. Eukaryota.
COG5391. LUCA.
HOGENOMiHOG000010283.
HOVERGENiHBG009723.
InParanoidiQ566W7.
KOiK17921.
PhylomeDBiQ566W7.

Family and domain databases

Gene3Di3.30.1520.10. 1 hit.
InterProiIPR001683. Phox.
IPR028649. SNX30.
[Graphical view]
PANTHERiPTHR10555:SF123. PTHR10555:SF123. 1 hit.
PfamiPF00787. PX. 1 hit.
[Graphical view]
SMARTiSM00312. PX. 1 hit.
[Graphical view]
SUPFAMiSSF64268. SSF64268. 1 hit.
PROSITEiPS50195. PX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q566W7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNGGTPRSL PSSGQKSIQE ICHPLSAEES ARSRSPDVLN PGEKDLSLPN
60 70 80 90 100
GTPVDTSSPA SSSSLLNRLQ LDDDLDAETR DLFVTVDDPK KHVSTMETYI
110 120 130 140 150
TYRVCTKTTR TEFDLPEYSV RRRYQDFDWL RIKLEDSQPT HLIPPLPEKF
160 170 180 190 200
VMKGVVDRFS EEFVETRRKA LDKFLKRVAD HPVLSFNEHF NAFLSAKDLN
210 220 230 240 250
KRQGLALLTK MGESVKYVTG GYKLRGRPVE FAAMGEYLDM FTQKLGTIDR
260 270 280 290 300
IAQRIIKEQT EFLMELREYG PVYSSWSSFE EDLHEPLEGV SGCVSNCSSA
310 320 330 340 350
LEELTEDMSE DFLPVLREYV LYIESMKNVL KKRDQVQAEY ETKLEAVVFR
360 370 380 390 400
EDKKTPMPTD VEKCQDRVEC FNADLKADWD RWQNNKRQDF RQLLTGMADK
410 420 430
NIQYYEKCLA AWESLIPLLQ DKQDAKGETN
Length:430
Mass (Da):49,470
Last modified:May 10, 2005 - v1
Checksum:i6924F8A9025CEA59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC093298 mRNA. Translation: AAH93298.1.
RefSeqiNP_001017798.1. NM_001017798.1.
UniGeneiDr.151498.

Genome annotation databases

GeneIDi550496.
KEGGidre:550496.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC093298 mRNA. Translation: AAH93298.1.
RefSeqiNP_001017798.1. NM_001017798.1.
UniGeneiDr.151498.

3D structure databases

ProteinModelPortaliQ566W7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000050176.

Proteomic databases

PaxDbiQ566W7.
PRIDEiQ566W7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi550496.
KEGGidre:550496.

Organism-specific databases

CTDi401548.
ZFINiZDB-GENE-050417-330. snx30.

Phylogenomic databases

eggNOGiKOG2273. Eukaryota.
COG5391. LUCA.
HOGENOMiHOG000010283.
HOVERGENiHBG009723.
InParanoidiQ566W7.
KOiK17921.
PhylomeDBiQ566W7.

Miscellaneous databases

PROiQ566W7.

Family and domain databases

Gene3Di3.30.1520.10. 1 hit.
InterProiIPR001683. Phox.
IPR028649. SNX30.
[Graphical view]
PANTHERiPTHR10555:SF123. PTHR10555:SF123. 1 hit.
PfamiPF00787. PX. 1 hit.
[Graphical view]
SMARTiSM00312. PX. 1 hit.
[Graphical view]
SUPFAMiSSF64268. SSF64268. 1 hit.
PROSITEiPS50195. PX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSNX30_DANRE
AccessioniPrimary (citable) accession number: Q566W7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: May 10, 2005
Last modified: October 5, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.