Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q56686 (CPDP_ALIFS) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
3',5'-cyclic-nucleotide phosphodiesterase

Short name=3':5'-CNP
Short name=PDEase
EC=3.1.4.17
Gene names
Name:cpdP
OrganismAliivibrio fischeri (Vibrio fischeri)
Taxonomic identifier668 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length330 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Seems to allow the organism to grow on cAMP.

Catalytic activity

Nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.

Subcellular location

Periplasm.

Sequence similarities

Belongs to the cAMP phosphodiesterase class-II family.

Ontologies

Keywords
   Cellular componentPeriplasm
   DomainSignal
   LigandcAMP
   Molecular functionHydrolase
Gene Ontology (GO)
   Biological_processcAMP catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_function3',5'-cyclic-AMP phosphodiesterase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential
Chain23 – 3303083',5'-cyclic-nucleotide phosphodiesterase
PRO_0000023354

Sequences

Sequence LengthMass (Da)Tools
Q56686 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: B87127EE2CE213D4

FASTA33036,089
        10         20         30         40         50         60 
MFKNKLAVLF TCLSVFSFSA QSGSFDTVTL GSKGGIQDGN LTAFLIKSEA DSNFVMLDAG 

        70         80         90        100        110        120 
SVVNGLIVSE QKGAFKDITV PDSSPYTKVG YLLKDRIKGY FISHAHLDHV AGLIISSPDD 

       130        140        150        160        170        180 
SKKPIYGLAA TNKDLMKNYF NWSAWPNFGN KGEGFKLNKY NYVDLQPGVW SPVAETTMSV 

       190        200        210        220        230        240 
VSLPLSHSGG QSTVFILKDS EGDVFAYFGD TGPDEVEKSS AMRTAWSVLA PFVKQGKLKG 

       250        260        270        280        290        300 
IIIEVSFTNE TPDKSLFGHL TPNWLVKELS VLEDMNGKGS LKDLNVAISH IKYSLKNSED 

       310        320        330 
PKVIIKKQLV EVNDLGVNFI FPEQGDSLQF 

« Hide

References

[1]"Characterization of a periplasmic 3':5'-cyclic nucleotide phosphodiesterase gene, cpdP, from the marine symbiotic bacterium Vibrio fischeri."
Dunlap P.V., Callahan S.M.
J. Bacteriol. 175:4615-4624(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: MJ-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L11527 Genomic DNA. Translation: AAA27513.1.
PIRA40602.

3D structure databases

ProteinModelPortalQ56686.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.60.15.10. 1 hit.
InterProIPR001279. Beta-lactamas-like.
IPR024225. cAMP-PdiesteraseII_CS.
IPR000396. Pdiesterase2.
[Graphical view]
PfamPF02112. PDEase_II. 1 hit.
[Graphical view]
PIRSFPIRSF000962. Cyc_nuc_PDEase. 1 hit.
PRINTSPR00388. PDIESTERASE2.
SMARTSM00849. Lactamase_B. 1 hit.
[Graphical view]
SUPFAMSSF56281. SSF56281. 1 hit.
PROSITEPS00607. PDEASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCPDP_ALIFS
AccessionPrimary (citable) accession number: Q56686
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1996
Last modified: April 16, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families