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Q56328

- TPN38_TREPA

UniProt

Q56328 - TPN38_TREPA

Protein

Membrane lipoprotein TpN38(b)

Gene

tpn38

Organism
Treponema pallidum (strain Nichols)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciTPAL243276:GC1H-321-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Membrane lipoprotein TpN38(b)
    Gene namesi
    Name:tpn38
    Ordered Locus Names:TP_0298
    OrganismiTreponema pallidum (strain Nichols)
    Taxonomic identifieri243276 [NCBI]
    Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeTreponema
    ProteomesiUP000000811: Chromosome

    Subcellular locationi

    Cell membrane Curated; Lipid-anchor Curated

    GO - Cellular componenti

    1. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1919By similarityAdd
    BLAST
    Chaini20 – 343324Membrane lipoprotein TpN38(b)PRO_0000018008Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Lipidationi20 – 201N-palmitoyl cysteineBy similarity
    Lipidationi20 – 201S-diacylglycerol cysteineBy similarity

    Keywords - PTMi

    Lipoprotein, Palmitate

    Interactioni

    Protein-protein interaction databases

    IntActiQ56328. 9 interactions.
    STRINGi243276.TP0298.

    Structurei

    Secondary structure

    1
    343
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi30 – 389
    Helixi44 – 6118
    Turni62 – 643
    Beta strandi67 – 737
    Helixi78 – 803
    Helixi81 – 9010
    Beta strandi95 – 1017
    Helixi104 – 11411
    Beta strandi120 – 1245
    Beta strandi131 – 1388
    Helixi140 – 15617
    Beta strandi167 – 1748
    Helixi177 – 1815
    Helixi183 – 19412
    Beta strandi199 – 2046
    Beta strandi206 – 2094
    Helixi211 – 22414
    Beta strandi228 – 2325
    Helixi234 – 2363
    Helixi237 – 24711
    Beta strandi250 – 2567
    Helixi259 – 2613
    Turni263 – 2653
    Beta strandi266 – 2727
    Helixi274 – 28613
    Beta strandi294 – 2985
    Helixi300 – 3023
    Beta strandi304 – 3074
    Helixi312 – 3176
    Helixi320 – 33516
    Beta strandi336 – 3383

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4IILX-ray1.30A21-343[»]
    ProteinModelPortaliQ56328.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the BMP lipoprotein family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1744.
    KOiK02058.
    OMAiNQREQAY.
    OrthoDBiEOG6Z9B3D.

    Family and domain databases

    InterProiIPR003760. Bmp.
    IPR028082. Peripla_BP_I.
    [Graphical view]
    PfamiPF02608. Bmp. 1 hit.
    [Graphical view]
    SUPFAMiSSF53822. SSF53822. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q56328-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNGAVCVLSA LIAVFTCFSC RPAVQDERAV RIAVFVPGFR HDSPVYAMLC    50
    DGVERAVTQE RATGRSIGLD IIEAGPNQAL WREKLAHLAA EQRYRLIVSS 100
    NPALPHVLEP ILRQFPLQRF LVLDAYAPQE HSLITFRYNQ WEQAYLAGHL 150
    SALVSASAMR FANADKKIGL IAGQSYPVMT QTIIPAFLAG ARAVDPAFEV 200
    DVRVVGNWYD AAKSADLARI LFHEGVDVMM PICGGANQGV LAAARELGFY 250
    VSWFDDNGYA RAPGYVVGSS VMEQERLAYE QTLRCIRGEL PSAGAWTLGV 300
    KDGYVRFIEE DPLYLQTVPE PIRVRQSALL RRIQSGELTL PVR 343
    Length:343
    Mass (Da):37,882
    Last modified:November 1, 1996 - v1
    Checksum:i800687C5A1420C4D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U12861 Genomic DNA. Translation: AAB02167.1.
    AE000520 Genomic DNA. Translation: AAC65287.1.
    PIRiD71341.
    RefSeqiNP_218739.1. NC_000919.1.
    WP_010881747.1. NC_021490.2.
    YP_008091158.1. NC_021490.2.

    Genome annotation databases

    EnsemblBacteriaiAAC65287; AAC65287; TP_0298.
    GeneIDi15851594.
    2611215.
    KEGGitpa:TP0298.
    tpw:TPANIC_0298.
    PATRICi20530587. VBITrePal57110_0316.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U12861 Genomic DNA. Translation: AAB02167.1 .
    AE000520 Genomic DNA. Translation: AAC65287.1 .
    PIRi D71341.
    RefSeqi NP_218739.1. NC_000919.1.
    WP_010881747.1. NC_021490.2.
    YP_008091158.1. NC_021490.2.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4IIL X-ray 1.30 A 21-343 [» ]
    ProteinModelPortali Q56328.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q56328. 9 interactions.
    STRINGi 243276.TP0298.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC65287 ; AAC65287 ; TP_0298 .
    GeneIDi 15851594.
    2611215.
    KEGGi tpa:TP0298.
    tpw:TPANIC_0298.
    PATRICi 20530587. VBITrePal57110_0316.

    Phylogenomic databases

    eggNOGi COG1744.
    KOi K02058.
    OMAi NQREQAY.
    OrthoDBi EOG6Z9B3D.

    Enzyme and pathway databases

    BioCyci TPAL243276:GC1H-321-MONOMER.

    Family and domain databases

    InterProi IPR003760. Bmp.
    IPR028082. Peripla_BP_I.
    [Graphical view ]
    Pfami PF02608. Bmp. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53822. SSF53822. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Expression and sequence analysis of a Treponema pallidum gene, Tpn38(b), encoding an exported protein with homology to T. pallidum and Borrelia burgdorferi proteins."
      Stamm L.V., Hardham J.M., Frye J.G.
      FEMS Microbiol. Lett. 135:57-63(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: Nichols.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nichols.

    Entry informationi

    Entry nameiTPN38_TREPA
    AccessioniPrimary (citable) accession number: Q56328
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 4, 2001
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 82 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3