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Protein

Membrane lipoprotein TpN38(b)

Gene

tpn38

Organism
Treponema pallidum (strain Nichols)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Membrane lipoprotein TpN38(b)
Gene namesi
Name:tpn38
Ordered Locus Names:TP_0298
OrganismiTreponema pallidum (strain Nichols)
Taxonomic identifieri243276 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeTreponema
Proteomesi
  • UP000000811 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19By similarityAdd BLAST19
ChainiPRO_000001800820 – 343Membrane lipoprotein TpN38(b)Add BLAST324

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi20N-palmitoyl cysteineBy similarity1
Lipidationi20S-diacylglycerol cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Palmitate

Interactioni

Protein-protein interaction databases

IntActiQ56328. 9 interactors.
STRINGi243276.TP0298.

Structurei

Secondary structure

1343
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi30 – 38Combined sources9
Helixi44 – 61Combined sources18
Turni62 – 64Combined sources3
Beta strandi67 – 73Combined sources7
Helixi78 – 80Combined sources3
Helixi81 – 90Combined sources10
Beta strandi95 – 101Combined sources7
Helixi104 – 114Combined sources11
Beta strandi120 – 124Combined sources5
Beta strandi131 – 138Combined sources8
Helixi140 – 156Combined sources17
Beta strandi167 – 174Combined sources8
Helixi177 – 181Combined sources5
Helixi183 – 194Combined sources12
Beta strandi199 – 204Combined sources6
Beta strandi206 – 209Combined sources4
Helixi211 – 224Combined sources14
Beta strandi228 – 232Combined sources5
Helixi234 – 236Combined sources3
Helixi237 – 247Combined sources11
Beta strandi250 – 256Combined sources7
Helixi259 – 261Combined sources3
Turni263 – 265Combined sources3
Beta strandi266 – 272Combined sources7
Helixi274 – 286Combined sources13
Beta strandi294 – 298Combined sources5
Helixi300 – 302Combined sources3
Beta strandi304 – 307Combined sources4
Helixi312 – 317Combined sources6
Helixi320 – 335Combined sources16
Beta strandi336 – 338Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4IILX-ray1.30A21-343[»]
ProteinModelPortaliQ56328.
SMRiQ56328.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the BMP lipoprotein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108SSC. Bacteria.
COG1744. LUCA.
KOiK02058.
OMAiRYNQREQ.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR003760. PnrA-like.
[Graphical view]
PfamiPF02608. Bmp. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q56328-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGAVCVLSA LIAVFTCFSC RPAVQDERAV RIAVFVPGFR HDSPVYAMLC
60 70 80 90 100
DGVERAVTQE RATGRSIGLD IIEAGPNQAL WREKLAHLAA EQRYRLIVSS
110 120 130 140 150
NPALPHVLEP ILRQFPLQRF LVLDAYAPQE HSLITFRYNQ WEQAYLAGHL
160 170 180 190 200
SALVSASAMR FANADKKIGL IAGQSYPVMT QTIIPAFLAG ARAVDPAFEV
210 220 230 240 250
DVRVVGNWYD AAKSADLARI LFHEGVDVMM PICGGANQGV LAAARELGFY
260 270 280 290 300
VSWFDDNGYA RAPGYVVGSS VMEQERLAYE QTLRCIRGEL PSAGAWTLGV
310 320 330 340
KDGYVRFIEE DPLYLQTVPE PIRVRQSALL RRIQSGELTL PVR
Length:343
Mass (Da):37,882
Last modified:November 1, 1996 - v1
Checksum:i800687C5A1420C4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U12861 Genomic DNA. Translation: AAB02167.1.
AE000520 Genomic DNA. Translation: AAC65287.1.
PIRiD71341.
RefSeqiWP_010881747.1. NC_021490.2.

Genome annotation databases

EnsemblBacteriaiAAC65287; AAC65287; TP_0298.
GeneIDi2611215.
KEGGitpa:TP_0298.
PATRICi20530587. VBITrePal57110_0316.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U12861 Genomic DNA. Translation: AAB02167.1.
AE000520 Genomic DNA. Translation: AAC65287.1.
PIRiD71341.
RefSeqiWP_010881747.1. NC_021490.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4IILX-ray1.30A21-343[»]
ProteinModelPortaliQ56328.
SMRiQ56328.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ56328. 9 interactors.
STRINGi243276.TP0298.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC65287; AAC65287; TP_0298.
GeneIDi2611215.
KEGGitpa:TP_0298.
PATRICi20530587. VBITrePal57110_0316.

Phylogenomic databases

eggNOGiENOG4108SSC. Bacteria.
COG1744. LUCA.
KOiK02058.
OMAiRYNQREQ.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR003760. PnrA-like.
[Graphical view]
PfamiPF02608. Bmp. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTPN38_TREPA
AccessioniPrimary (citable) accession number: Q56328
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 4, 2001
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.