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Protein
Submitted name:

Arl6ip2 protein

Gene

Atl2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Arl6ip2 proteinImported
Gene namesi
Name:Atl2Imported
Synonyms:Arl6ip2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1305125. Atl2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ562A0.

Expressioni

Gene expression databases

ExpressionAtlasiQ562A0. baseline and differential.
GenevisibleiQ562A0. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008988.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG325148.
HOGENOMiHOG000234332.
HOVERGENiHBG106484.
KOiK17339.

Sequencei

Sequence statusi: Fragment.

Q562A0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
FCRRYQDQLE AEIEETYANF IKHNDGKNIF YAARTPATLF AVMFAMYIIS
60 70 80 90 100
GLTGFIGLNS IAVLCNLVMG LALTSLCTWA YVKYSGEFRE IGTMIDQVAE
110 120 130 140
TLWEQVLKPL GDNLMEENIR QSVTNSIKAG LTDQVSHHAR LKTD
Length:144
Mass (Da):16,235
Last modified:May 10, 2005 - v1
Checksum:iE7F555DC7CA16086
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC092650 mRNA. Translation: AAH92650.1.
RefSeqiNP_001094141.1. NM_001100671.1.
UniGeneiRn.203081.

Genome annotation databases

GeneIDi298757.
KEGGirno:298757.
UCSCiRGD:1305125. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC092650 mRNA. Translation: AAH92650.1.
RefSeqiNP_001094141.1. NM_001100671.1.
UniGeneiRn.203081.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008988.

Proteomic databases

PaxDbiQ562A0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi298757.
KEGGirno:298757.
UCSCiRGD:1305125. rat.

Organism-specific databases

CTDi64225.
RGDi1305125. Atl2.

Phylogenomic databases

eggNOGiNOG325148.
HOGENOMiHOG000234332.
HOVERGENiHBG106484.
KOiK17339.

Miscellaneous databases

NextBioi644280.

Gene expression databases

ExpressionAtlasiQ562A0. baseline and differential.
GenevisibleiQ562A0. RN.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiQ562A0_RAT
AccessioniPrimary (citable) accession number: Q562A0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: June 24, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.