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Q56230 (RS4E_THEAC) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S4e
Gene names
Name:rps4e
Ordered Locus Names:Ta1259
OrganismThermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Taxonomic identifier273075 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Thermoplasmata › Thermoplasmatales › Thermoplasmataceae › Thermoplasma

Protein attributes

Sequence length235 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S4e family.

Contains 1 S4 RNA-binding domain.

Sequence caution

The sequence AAB02244.1 differs from that shown. Reason: Erroneous initiation.

The sequence CAC12383.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 23523530S ribosomal protein S4e HAMAP MF_00485
PRO_0000130865

Regions

Domain38 – 9962S4 RNA-binding

Secondary structure

1 ....................................... 235
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q56230 [UniParc].

Last modified November 16, 2001. Version 2.
Checksum: E3B81B6B1CA123C6

FASTA23526,266
        10         20         30         40         50         60 
MINKTKRLMV SRQVKIPRKT YFWGPTPNPG MHPKDQSVTL LSIIRDYLKL SDKEREAARI 

        70         80         90        100        110        120 
LANGLVKVDG KTVREKKFAV GFMDVIEING ESYRVVYNDQ GALVLMKETK ERASMKLLKV 

       130        140        150        160        170        180 
RSKVIAPGNR IQLGTHDGRT FITDDKSKKV GDVWAVSVPD MKISEIIKMQ PGNKAYITAG 

       190        200        210        220        230 
SHVNQTGTIS KIEAKEGSSA NLVHFQEGFS TIKDHVFMIG SSKFSFVLSP EEVIP

« Hide

References

« Hide 'large scale' references
[1]"Nucleotide sequence of the ribosomal protein genes S4e and L5 in the archaeon Thermoplasma acidophilum."
Thomas N.A., Jarrell K.F.
Submitted (JUN-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum."
Ruepp A., Graml W., Santos-Martinez M.-L., Koretke K.K., Volker C., Mewes H.-W., Frishman D., Stocker S., Lupas A.N., Baumeister W.
Nature 407:508-513(2000) [PubMed: 11029001] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U57643 Genomic DNA. Translation: AAB02244.1. Different initiation.
AL445067 Genomic DNA. Translation: CAC12383.1. Different initiation.
PIRT37467.
RefSeqNP_394715.1. NC_002578.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3KBGX-ray1.75A31-235[»]
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1456748.
GenomeReviewsGene locus Ta1259 in contig AL139299_GR.
KEGGtac:Ta1259.
NMPDRfig|273075.1.peg.1237.

Phylogenomic databases

HOGENOMHBG392118.
OMARLRECLP.
PhylomeDBQ56230.
ProtClustDBPRK04313.

Enzyme and pathway databases

BioCycTACI273075:TA1259-MONOMER.

Family and domain databases

HAMAPMF_00485. Ribosomal_S4e.
[Tree]
InterProIPR000876. Ribosomal_S4e.
IPR022994. Ribosomal_S4e_arc.
IPR013845. Ribosomal_S4e_central.
IPR002942. S4_RNA-bd.
[Graphical view]
Gene3DG3DSA:3.10.290.10. G3DSA:3.10.290.10. 1 hit.
KOK02987.
PANTHERPTHR11581. Ribosomal_S4E. 1 hit.
PfamPF00900. Ribosomal_S4e. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFPIRSF002116. Ribosomal_S4. 1 hit.
ProDomPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00363. S4. 1 hit.
[Graphical view]
PROSITEPS00528. RIBOSOMAL_S4E. False negative.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS4E_THEAC
AccessionPrimary (citable) accession number: Q56230
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 16, 2001
Last modified: December 14, 2011
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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