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Protein
Submitted name:

Sll0088 protein

Gene

sll0088

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Sll0088 proteinImported
Gene namesi
Ordered Locus Names:sll0088Imported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

IntActiQ55789. 2 interactions.
STRINGi1148.sll0088.

Structurei

3D structure databases

ProteinModelPortaliQ55789.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2345.
HOGENOMiHOG000244966.
InParanoidiQ55789.
KOiK09012.
OMAiELCEAEQ.
PhylomeDBiQ55789.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014075. SUF_FeS_clus_asmb_SufR_cyano.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF13412. HTH_24. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02702. SufR_cyano. 1 hit.

Sequencei

Sequence statusi: Complete.

Q55789-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVVLSVYWT ATHRFQNFLL LLLTMTLSSS HSTKEDILCY LLKEGQGSAI
60 70 80 90 100
AMAEELGISP QAMRKHLKDL ENDGLIEHQQ ERQSMGRPQF LYQLSKQGRE
110 120 130 140 150
QFPQRYGEFA LSFIDSLVET VGEEQLGAVL KKQWQRKAEA YRQQIGQGPL
160 170 180 190 200
SKRVHKLVEL RRQEGYMAEI HPLSVEQAEK FILSEHHCAI ADVAESYPTV
210 220 230 240
CGHELEMFAA ILPDCAIERT HWLNDGEHTC GYLIQSKTPN
Length:240
Mass (Da):27,370
Last modified:November 1, 1996 - v1
Checksum:i87D6BF0448A3627A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10541.1.
PIRiS76597.
RefSeqiYP_005652532.1. NC_017277.1.
YP_007452347.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA10541; BAA10541; BAA10541.
KEGGisyn:sll0088.
PATRICi23842648. VBISynSp132158_2863.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10541.1.
PIRiS76597.
RefSeqiYP_005652532.1. NC_017277.1.
YP_007452347.1. NC_020286.1.

3D structure databases

ProteinModelPortaliQ55789.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55789. 2 interactions.
STRINGi1148.sll0088.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10541; BAA10541; BAA10541.
KEGGisyn:sll0088.
PATRICi23842648. VBISynSp132158_2863.

Phylogenomic databases

eggNOGiCOG2345.
HOGENOMiHOG000244966.
InParanoidiQ55789.
KOiK09012.
OMAiELCEAEQ.
PhylomeDBiQ55789.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014075. SUF_FeS_clus_asmb_SufR_cyano.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF13412. HTH_24. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02702. SufR_cyano. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / KazusaImported.

Entry informationi

Entry nameiQ55789_SYNY3
AccessioniPrimary (citable) accession number: Q55789
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 27, 2015
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.