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Q55705 (Y232_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized membrane protein slr0232
Gene names
Ordered Locus Names:slr0232
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length218 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the DedA family.

Ontologies

Keywords
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 218218Uncharacterized membrane protein slr0232
PRO_0000161432

Regions

Transmembrane27 – 4923Helical; Potential
Transmembrane57 – 7721Helical; Potential
Transmembrane115 – 13521Helical; Potential
Transmembrane142 – 16221Helical; Potential
Transmembrane180 – 20021Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
Q55705 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: C04B5D7B7EA7F863

FASTA21823,782
        10         20         30         40         50         60 
MGWEFFSLET LQELARQYGY GAVFFGIALE NAGIPIPGET ITLLGGFLAG SGDLSYGGVL 

        70         80         90        100        110        120 
IAAIAGAVLG DSCGYWVGRW GGWPLLTRAA QLFNIPQEKL DQARHKFSQN GAAAVFFGRF 

       130        140        150        160        170        180 
VTLLRIFAGP MAGIVRMPYG KFLLYNIGGA SVWAAITVSL AYFLGRVVTI EQIIAWTTQF 

       190        200        210 
SWFALAAVVG MVGIYFVFHF LQKRFDQTIE STIGDRPQ 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA10237.1.
PIRS76385.
RefSeqNP_442167.1. NC_000911.1.
YP_005652226.1. NC_017277.1.
YP_007452044.1. NC_020286.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ55705. 2 interactions.
STRING1148.slr0232.

Protocols and materials databases

DNASU952086.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA10237; BAA10237; BAA10237.
GeneID12253445.
14617720.
952086.
KEGGsyn:slr0232.
syy:SYNGTS_2273.
syz:MYO_122980.
PATRIC23841954. VBISynSp132158_2519.

Phylogenomic databases

eggNOGCOG0586.
OMAPLACGIA.
OrthoDBEOG6QG8J7.
PhylomeDBQ55705.
ProtClustDBCLSK893447.

Family and domain databases

InterProIPR015414. SNARE_assoc.
[Graphical view]
PfamPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY232_SYNY3
AccessionPrimary (citable) accession number: Q55705
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: April 16, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families