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Protein

Uncharacterized WD repeat-containing protein sll0163

Gene

sll0163

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein sll0163
Gene namesi
Ordered Locus Names:sll0163
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16931693Uncharacterized WD repeat-containing protein sll0163PRO_0000051517Add
BLAST

Proteomic databases

PaxDbiQ55563.

Interactioni

Protein-protein interaction databases

IntActiQ55563. 2 interactions.
STRINGi1148.sll0163.

Structurei

3D structure databases

ProteinModelPortaliQ55563.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati1008 – 104235WD 1Add
BLAST
Repeati1053 – 108331WD 2Add
BLAST
Repeati1094 – 112431WD 3Add
BLAST
Repeati1135 – 116531WD 4Add
BLAST
Repeati1176 – 120631WD 5Add
BLAST
Repeati1217 – 124731WD 6Add
BLAST
Repeati1258 – 128831WD 7Add
BLAST
Repeati1299 – 132931WD 8Add
BLAST
Repeati1340 – 137031WD 9Add
BLAST
Repeati1381 – 141131WD 10Add
BLAST
Repeati1422 – 145231WD 11Add
BLAST
Repeati1463 – 149331WD 12Add
BLAST
Repeati1504 – 153431WD 13Add
BLAST
Repeati1545 – 157531WD 14Add
BLAST
Repeati1586 – 161631WD 15Add
BLAST
Repeati1627 – 165731WD 16Add
BLAST

Sequence similaritiesi

Contains 16 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiCOG2319.
InParanoidiQ55563.
OrthoDBiEOG66F036.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 16 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 16 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 8 hits.
PS50082. WD_REPEATS_2. 15 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q55563-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTVMLSCLTQ QQELLQSLAD RVGQPAIQDN LYFCLAGQFT WVEDWYTTAI
60 70 80 90 100
AGDVLIFDAG EKEQLARVLQ QWEQFTGHVI LITGLTEEPD PQTFLTQLAL
110 120 130 140 150
GKQQRCGERH FHWIVLVDPT IEEAFRGLQT FLDGKSHWLD LRLGVGDLEQ
160 170 180 190 200
CTDELWQCVW LEPSPLAPEK RQEMLVNLPH WLAEIVDQKQ NLELEPISLL
210 220 230 240 250
QAKLSLLQGL ARESRGEMGR KQAQCHYRES LDVWELLGDT EAIIWLSLRL
260 270 280 290 300
GYLFLLQAYG EKSRGHQLWQ QTRNYAQTAI AALENQQWHF THGETLNLLG
310 320 330 340 350
EILRGLEDWE QLRQAAENSL IFFYQLSPFA ATDTTPERNQ EKLWTELELQ
360 370 380 390 400
GLISLAHSYL CEALVEQWKF DEGKEALKRA FETRPKQVEE RDYRPCLANL
410 420 430 440 450
HYLAGRVQLA NDQIRESLMT LRQAQTLVSF EDNPRLYLAI LVELRECYLQ
460 470 480 490 500
LEDWLAALAI DQEYQAREYR LGQRAFIGPK PLPCWPEQRI CRHPLAPEKM
510 520 530 540 550
LGGGAEARSA VQSKTMVSLT WQDLQKVWEQ KPTPVLVLTG EPGVGKTSWL
560 570 580 590 600
AGEVLQQMSP ERVLLVDFTP HWAEKLWVHL GESFSLPSLG QATTPELVSA
610 620 630 640 650
LQALPILDLL LVLDGENGSL PWQKSPSLRQ QELAQVLWQW LLTTSPSQGV
660 670 680 690 700
RLLISVPPTA IADLYEELKG QLGEEHSLPP LQYQTLSPPT LGQAENWLTQ
710 720 730 740 750
AMAQCRHPWP PSLQSQFLGD LAMEGNGEQQ PWLHPIDLQL LGTVLEQEQV
760 770 780 790 800
TKSADYQGKK LDEWLTLAVQ TYLAFLPPHL LKKALQLLKS LADGQQALCL
810 820 830 840 850
KTEYQLLAAL YSAPEPAADN PPEFAQEDIQ QLQLLLTLLL RGRLIIVISQ
860 870 880 890 900
ATLPYYRLST THLAHALQGK SAVISTPALI NAGRRGSKSN PNLIAPSPGD
910 920 930 940 950
RQQGNEDLIA ELEAGSSAEE QVVAQKLKAA QLQYQKLVAG INLEKQCQFI
960 970 980 990 1000
LKQFLVYPLE ALLAAVKTGQ DLQKLVTPET PLVQYPSLAP WLSLHSILAR
1010 1020 1030 1040 1050
INECNRCHHE GPVTVLRISP SMENTPPLVL TATTNGIAYL WSFHGELINV
1060 1070 1080 1090 1100
LRGHQEAITA LDWSADGQYF ATASADHTVK LWQRHGEEVA TLRGHEDWVR
1110 1120 1130 1140 1150
SVHFSPHHQF LVTSGQDNTA RIWNFAGEQL TLCQGHADWV RNAEFNCHGQ
1160 1170 1180 1190 1200
ILLTASRDGT ARLWDLEGRE IGLCQGHTSW VRNAQFSPDG QWIVTCSADG
1210 1220 1230 1240 1250
TARLWDLSSQ CFAVLKGHQN WVNNALWSPD GQHIITSSSD GTARVWSRHG
1260 1270 1280 1290 1300
KCLGTLRGHD HNIHGARFSL DGQKIVTYST DNTARLWTKE GTLLTILRGH
1310 1320 1330 1340 1350
QKEVYDADFS ADGRFVFTVS ADQTARQWDI SQKDTITLTG HSHWVRNAHF
1360 1370 1380 1390 1400
NPKGDRLLTV SRDKTARLWT TEGECVAVLA DHQGWVREGQ FSPDGQWIVT
1410 1420 1430 1440 1450
GSADKTAQLW NVLGKKLTVL RGHQDAVLNV RFSPDSQYIV TASKDGTARV
1460 1470 1480 1490 1500
WNNTGRELAV LRHYEKNIFA AEFSADGQFI VTASDDNTAG IWEIVGREVG
1510 1520 1530 1540 1550
ICRGHEGPVY FAQFSADSRY ILTASVDNTA RIWDFLGRPL LTLAGHQSIV
1560 1570 1580 1590 1600
YQARFSPEGN LIATVSADHT ARLWDRSGKT VAVLYGHQGL VGTVDWSPDG
1610 1620 1630 1640 1650
QMLVTASNDG TARLWDLSGR ELLTLEGHGN WVRSAEFSPD GRWVLTSSAD
1660 1670 1680 1690
GTAKLWPVKT LPQLLSQGGQ WLKNYLTHNA LVSPADRPGA KVT
Length:1,693
Mass (Da):189,935
Last modified:November 1, 1996 - v1
Checksum:i0977A827A0251CFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10064.1.
PIRiS76086.
RefSeqiNP_441994.1. NC_000911.1.
YP_005652054.1. NC_017277.1.
YP_007451874.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA10064; BAA10064; BAA10064.
GeneIDi952766.
KEGGisyn:sll0163.
PATRICi23841554. VBISynSp132158_2325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10064.1.
PIRiS76086.
RefSeqiNP_441994.1. NC_000911.1.
YP_005652054.1. NC_017277.1.
YP_007451874.1. NC_020286.1.

3D structure databases

ProteinModelPortaliQ55563.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55563. 2 interactions.
STRINGi1148.sll0163.

Proteomic databases

PaxDbiQ55563.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10064; BAA10064; BAA10064.
GeneIDi952766.
KEGGisyn:sll0163.
PATRICi23841554. VBISynSp132158_2325.

Phylogenomic databases

eggNOGiCOG2319.
InParanoidiQ55563.
OrthoDBiEOG66F036.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 16 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 16 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 8 hits.
PS50082. WD_REPEATS_2. 15 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
    Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
    DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27184 / PCC 6803 / N-1.
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiY163_SYNY3
AccessioniPrimary (citable) accession number: Q55563
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: January 7, 2015
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.