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Q55563

- Y163_SYNY3

UniProt

Q55563 - Y163_SYNY3

Protein

Uncharacterized WD repeat-containing protein sll0163

Gene

sll0163

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 92 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized WD repeat-containing protein sll0163
    Gene namesi
    Ordered Locus Names:sll0163
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 16931693Uncharacterized WD repeat-containing protein sll0163PRO_0000051517Add
    BLAST

    Proteomic databases

    PaxDbiQ55563.

    Interactioni

    Protein-protein interaction databases

    IntActiQ55563. 2 interactions.
    STRINGi1148.sll0163.

    Structurei

    3D structure databases

    ProteinModelPortaliQ55563.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati1008 – 104235WD 1Add
    BLAST
    Repeati1053 – 108331WD 2Add
    BLAST
    Repeati1094 – 112431WD 3Add
    BLAST
    Repeati1135 – 116531WD 4Add
    BLAST
    Repeati1176 – 120631WD 5Add
    BLAST
    Repeati1217 – 124731WD 6Add
    BLAST
    Repeati1258 – 128831WD 7Add
    BLAST
    Repeati1299 – 132931WD 8Add
    BLAST
    Repeati1340 – 137031WD 9Add
    BLAST
    Repeati1381 – 141131WD 10Add
    BLAST
    Repeati1422 – 145231WD 11Add
    BLAST
    Repeati1463 – 149331WD 12Add
    BLAST
    Repeati1504 – 153431WD 13Add
    BLAST
    Repeati1545 – 157531WD 14Add
    BLAST
    Repeati1586 – 161631WD 15Add
    BLAST
    Repeati1627 – 165731WD 16Add
    BLAST

    Sequence similaritiesi

    Contains 16 WD repeats.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, WD repeat

    Phylogenomic databases

    eggNOGiCOG2319.
    OrthoDBiEOG66F036.

    Family and domain databases

    Gene3Di1.25.40.10. 1 hit.
    2.130.10.10. 3 hits.
    InterProiIPR020472. G-protein_beta_WD-40_rep.
    IPR011990. TPR-like_helical.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF00400. WD40. 16 hits.
    [Graphical view]
    PRINTSiPR00320. GPROTEINBRPT.
    SMARTiSM00320. WD40. 16 hits.
    [Graphical view]
    SUPFAMiSSF50978. SSF50978. 2 hits.
    PROSITEiPS00678. WD_REPEATS_1. 8 hits.
    PS50082. WD_REPEATS_2. 15 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q55563-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVMLSCLTQ QQELLQSLAD RVGQPAIQDN LYFCLAGQFT WVEDWYTTAI     50
    AGDVLIFDAG EKEQLARVLQ QWEQFTGHVI LITGLTEEPD PQTFLTQLAL 100
    GKQQRCGERH FHWIVLVDPT IEEAFRGLQT FLDGKSHWLD LRLGVGDLEQ 150
    CTDELWQCVW LEPSPLAPEK RQEMLVNLPH WLAEIVDQKQ NLELEPISLL 200
    QAKLSLLQGL ARESRGEMGR KQAQCHYRES LDVWELLGDT EAIIWLSLRL 250
    GYLFLLQAYG EKSRGHQLWQ QTRNYAQTAI AALENQQWHF THGETLNLLG 300
    EILRGLEDWE QLRQAAENSL IFFYQLSPFA ATDTTPERNQ EKLWTELELQ 350
    GLISLAHSYL CEALVEQWKF DEGKEALKRA FETRPKQVEE RDYRPCLANL 400
    HYLAGRVQLA NDQIRESLMT LRQAQTLVSF EDNPRLYLAI LVELRECYLQ 450
    LEDWLAALAI DQEYQAREYR LGQRAFIGPK PLPCWPEQRI CRHPLAPEKM 500
    LGGGAEARSA VQSKTMVSLT WQDLQKVWEQ KPTPVLVLTG EPGVGKTSWL 550
    AGEVLQQMSP ERVLLVDFTP HWAEKLWVHL GESFSLPSLG QATTPELVSA 600
    LQALPILDLL LVLDGENGSL PWQKSPSLRQ QELAQVLWQW LLTTSPSQGV 650
    RLLISVPPTA IADLYEELKG QLGEEHSLPP LQYQTLSPPT LGQAENWLTQ 700
    AMAQCRHPWP PSLQSQFLGD LAMEGNGEQQ PWLHPIDLQL LGTVLEQEQV 750
    TKSADYQGKK LDEWLTLAVQ TYLAFLPPHL LKKALQLLKS LADGQQALCL 800
    KTEYQLLAAL YSAPEPAADN PPEFAQEDIQ QLQLLLTLLL RGRLIIVISQ 850
    ATLPYYRLST THLAHALQGK SAVISTPALI NAGRRGSKSN PNLIAPSPGD 900
    RQQGNEDLIA ELEAGSSAEE QVVAQKLKAA QLQYQKLVAG INLEKQCQFI 950
    LKQFLVYPLE ALLAAVKTGQ DLQKLVTPET PLVQYPSLAP WLSLHSILAR 1000
    INECNRCHHE GPVTVLRISP SMENTPPLVL TATTNGIAYL WSFHGELINV 1050
    LRGHQEAITA LDWSADGQYF ATASADHTVK LWQRHGEEVA TLRGHEDWVR 1100
    SVHFSPHHQF LVTSGQDNTA RIWNFAGEQL TLCQGHADWV RNAEFNCHGQ 1150
    ILLTASRDGT ARLWDLEGRE IGLCQGHTSW VRNAQFSPDG QWIVTCSADG 1200
    TARLWDLSSQ CFAVLKGHQN WVNNALWSPD GQHIITSSSD GTARVWSRHG 1250
    KCLGTLRGHD HNIHGARFSL DGQKIVTYST DNTARLWTKE GTLLTILRGH 1300
    QKEVYDADFS ADGRFVFTVS ADQTARQWDI SQKDTITLTG HSHWVRNAHF 1350
    NPKGDRLLTV SRDKTARLWT TEGECVAVLA DHQGWVREGQ FSPDGQWIVT 1400
    GSADKTAQLW NVLGKKLTVL RGHQDAVLNV RFSPDSQYIV TASKDGTARV 1450
    WNNTGRELAV LRHYEKNIFA AEFSADGQFI VTASDDNTAG IWEIVGREVG 1500
    ICRGHEGPVY FAQFSADSRY ILTASVDNTA RIWDFLGRPL LTLAGHQSIV 1550
    YQARFSPEGN LIATVSADHT ARLWDRSGKT VAVLYGHQGL VGTVDWSPDG 1600
    QMLVTASNDG TARLWDLSGR ELLTLEGHGN WVRSAEFSPD GRWVLTSSAD 1650
    GTAKLWPVKT LPQLLSQGGQ WLKNYLTHNA LVSPADRPGA KVT 1693
    Length:1,693
    Mass (Da):189,935
    Last modified:November 1, 1996 - v1
    Checksum:i0977A827A0251CFF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10064.1.
    PIRiS76086.
    RefSeqiNP_441994.1. NC_000911.1.
    YP_005652054.1. NC_017277.1.
    YP_007451874.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA10064; BAA10064; BAA10064.
    GeneIDi952766.
    KEGGisyn:sll0163.
    syy:SYNGTS_2101.
    syz:MYO_121210.
    PATRICi23841554. VBISynSp132158_2325.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10064.1 .
    PIRi S76086.
    RefSeqi NP_441994.1. NC_000911.1.
    YP_005652054.1. NC_017277.1.
    YP_007451874.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali Q55563.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q55563. 2 interactions.
    STRINGi 1148.sll0163.

    Proteomic databases

    PaxDbi Q55563.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA10064 ; BAA10064 ; BAA10064 .
    GeneIDi 952766.
    KEGGi syn:sll0163.
    syy:SYNGTS_2101.
    syz:MYO_121210.
    PATRICi 23841554. VBISynSp132158_2325.

    Phylogenomic databases

    eggNOGi COG2319.
    OrthoDBi EOG66F036.

    Family and domain databases

    Gene3Di 1.25.40.10. 1 hit.
    2.130.10.10. 3 hits.
    InterProi IPR020472. G-protein_beta_WD-40_rep.
    IPR011990. TPR-like_helical.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF00400. WD40. 16 hits.
    [Graphical view ]
    PRINTSi PR00320. GPROTEINBRPT.
    SMARTi SM00320. WD40. 16 hits.
    [Graphical view ]
    SUPFAMi SSF50978. SSF50978. 2 hits.
    PROSITEi PS00678. WD_REPEATS_1. 8 hits.
    PS50082. WD_REPEATS_2. 15 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
      Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
      DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27184 / PCC 6803 / N-1.
    2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiY163_SYNY3
    AccessioniPrimary (citable) accession number: Q55563
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 15, 1998
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 92 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3