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Q55563 (Y163_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 88. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized WD repeat-containing protein sll0163
Gene names
Ordered Locus Names:sll0163
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length1693 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 16 WD repeats.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 16931693Uncharacterized WD repeat-containing protein sll0163
PRO_0000051517

Regions

Repeat1008 – 104235WD 1
Repeat1053 – 108331WD 2
Repeat1094 – 112431WD 3
Repeat1135 – 116531WD 4
Repeat1176 – 120631WD 5
Repeat1217 – 124731WD 6
Repeat1258 – 128831WD 7
Repeat1299 – 132931WD 8
Repeat1340 – 137031WD 9
Repeat1381 – 141131WD 10
Repeat1422 – 145231WD 11
Repeat1463 – 149331WD 12
Repeat1504 – 153431WD 13
Repeat1545 – 157531WD 14
Repeat1586 – 161631WD 15
Repeat1627 – 165731WD 16

Sequences

Sequence LengthMass (Da)Tools
Q55563 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 0977A827A0251CFF

FASTA1,693189,935
        10         20         30         40         50         60 
MTVMLSCLTQ QQELLQSLAD RVGQPAIQDN LYFCLAGQFT WVEDWYTTAI AGDVLIFDAG 

        70         80         90        100        110        120 
EKEQLARVLQ QWEQFTGHVI LITGLTEEPD PQTFLTQLAL GKQQRCGERH FHWIVLVDPT 

       130        140        150        160        170        180 
IEEAFRGLQT FLDGKSHWLD LRLGVGDLEQ CTDELWQCVW LEPSPLAPEK RQEMLVNLPH 

       190        200        210        220        230        240 
WLAEIVDQKQ NLELEPISLL QAKLSLLQGL ARESRGEMGR KQAQCHYRES LDVWELLGDT 

       250        260        270        280        290        300 
EAIIWLSLRL GYLFLLQAYG EKSRGHQLWQ QTRNYAQTAI AALENQQWHF THGETLNLLG 

       310        320        330        340        350        360 
EILRGLEDWE QLRQAAENSL IFFYQLSPFA ATDTTPERNQ EKLWTELELQ GLISLAHSYL 

       370        380        390        400        410        420 
CEALVEQWKF DEGKEALKRA FETRPKQVEE RDYRPCLANL HYLAGRVQLA NDQIRESLMT 

       430        440        450        460        470        480 
LRQAQTLVSF EDNPRLYLAI LVELRECYLQ LEDWLAALAI DQEYQAREYR LGQRAFIGPK 

       490        500        510        520        530        540 
PLPCWPEQRI CRHPLAPEKM LGGGAEARSA VQSKTMVSLT WQDLQKVWEQ KPTPVLVLTG 

       550        560        570        580        590        600 
EPGVGKTSWL AGEVLQQMSP ERVLLVDFTP HWAEKLWVHL GESFSLPSLG QATTPELVSA 

       610        620        630        640        650        660 
LQALPILDLL LVLDGENGSL PWQKSPSLRQ QELAQVLWQW LLTTSPSQGV RLLISVPPTA 

       670        680        690        700        710        720 
IADLYEELKG QLGEEHSLPP LQYQTLSPPT LGQAENWLTQ AMAQCRHPWP PSLQSQFLGD 

       730        740        750        760        770        780 
LAMEGNGEQQ PWLHPIDLQL LGTVLEQEQV TKSADYQGKK LDEWLTLAVQ TYLAFLPPHL 

       790        800        810        820        830        840 
LKKALQLLKS LADGQQALCL KTEYQLLAAL YSAPEPAADN PPEFAQEDIQ QLQLLLTLLL 

       850        860        870        880        890        900 
RGRLIIVISQ ATLPYYRLST THLAHALQGK SAVISTPALI NAGRRGSKSN PNLIAPSPGD 

       910        920        930        940        950        960 
RQQGNEDLIA ELEAGSSAEE QVVAQKLKAA QLQYQKLVAG INLEKQCQFI LKQFLVYPLE 

       970        980        990       1000       1010       1020 
ALLAAVKTGQ DLQKLVTPET PLVQYPSLAP WLSLHSILAR INECNRCHHE GPVTVLRISP 

      1030       1040       1050       1060       1070       1080 
SMENTPPLVL TATTNGIAYL WSFHGELINV LRGHQEAITA LDWSADGQYF ATASADHTVK 

      1090       1100       1110       1120       1130       1140 
LWQRHGEEVA TLRGHEDWVR SVHFSPHHQF LVTSGQDNTA RIWNFAGEQL TLCQGHADWV 

      1150       1160       1170       1180       1190       1200 
RNAEFNCHGQ ILLTASRDGT ARLWDLEGRE IGLCQGHTSW VRNAQFSPDG QWIVTCSADG 

      1210       1220       1230       1240       1250       1260 
TARLWDLSSQ CFAVLKGHQN WVNNALWSPD GQHIITSSSD GTARVWSRHG KCLGTLRGHD 

      1270       1280       1290       1300       1310       1320 
HNIHGARFSL DGQKIVTYST DNTARLWTKE GTLLTILRGH QKEVYDADFS ADGRFVFTVS 

      1330       1340       1350       1360       1370       1380 
ADQTARQWDI SQKDTITLTG HSHWVRNAHF NPKGDRLLTV SRDKTARLWT TEGECVAVLA 

      1390       1400       1410       1420       1430       1440 
DHQGWVREGQ FSPDGQWIVT GSADKTAQLW NVLGKKLTVL RGHQDAVLNV RFSPDSQYIV 

      1450       1460       1470       1480       1490       1500 
TASKDGTARV WNNTGRELAV LRHYEKNIFA AEFSADGQFI VTASDDNTAG IWEIVGREVG 

      1510       1520       1530       1540       1550       1560 
ICRGHEGPVY FAQFSADSRY ILTASVDNTA RIWDFLGRPL LTLAGHQSIV YQARFSPEGN 

      1570       1580       1590       1600       1610       1620 
LIATVSADHT ARLWDRSGKT VAVLYGHQGL VGTVDWSPDG QMLVTASNDG TARLWDLSGR 

      1630       1640       1650       1660       1670       1680 
ELLTLEGHGN WVRSAEFSPD GRWVLTSSAD GTAKLWPVKT LPQLLSQGGQ WLKNYLTHNA 

      1690 
LVSPADRPGA KVT 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA10064.1.
PIRS76086.
RefSeqNP_441994.1. NC_000911.1.
YP_005652054.1. NC_017277.1.
YP_007451874.1. NC_020286.1.

3D structure databases

ProteinModelPortalQ55563.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ55563. 2 interactions.
STRING1148.sll0163.

Proteomic databases

PaxDbQ55563.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA10064; BAA10064; BAA10064.
GeneID12253266.
14617543.
952766.
KEGGsyn:sll0163.
syy:SYNGTS_2101.
syz:MYO_121210.
PATRIC23841554. VBISynSp132158_2325.

Phylogenomic databases

eggNOGCOG2319.
OrthoDBEOG66F036.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
2.130.10.10. 3 hits.
InterProIPR020472. G-protein_beta_WD-40_rep.
IPR027728. Topless_fam.
IPR011990. TPR-like_helical.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERPTHR22847:SF50. PTHR22847:SF50. 1 hit.
PfamPF00400. WD40. 16 hits.
[Graphical view]
PRINTSPR00320. GPROTEINBRPT.
SMARTSM00320. WD40. 16 hits.
[Graphical view]
SUPFAMSSF50978. SSF50978. 2 hits.
PROSITEPS00678. WD_REPEATS_1. 8 hits.
PS50082. WD_REPEATS_2. 15 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY163_SYNY3
AccessionPrimary (citable) accession number: Q55563
Entry history
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: February 19, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families