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Protein

Uncharacterized WD repeat-containing protein sll0163

Gene

sll0163

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein sll0163
Gene namesi
Ordered Locus Names:sll0163
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000515171 – 1693Uncharacterized WD repeat-containing protein sll0163Add BLAST1693

Proteomic databases

PRIDEiQ55563.

Interactioni

Protein-protein interaction databases

IntActiQ55563. 2 interactors.

Structurei

3D structure databases

ProteinModelPortaliQ55563.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati1008 – 1042WD 1Add BLAST35
Repeati1053 – 1083WD 2Add BLAST31
Repeati1094 – 1124WD 3Add BLAST31
Repeati1135 – 1165WD 4Add BLAST31
Repeati1176 – 1206WD 5Add BLAST31
Repeati1217 – 1247WD 6Add BLAST31
Repeati1258 – 1288WD 7Add BLAST31
Repeati1299 – 1329WD 8Add BLAST31
Repeati1340 – 1370WD 9Add BLAST31
Repeati1381 – 1411WD 10Add BLAST31
Repeati1422 – 1452WD 11Add BLAST31
Repeati1463 – 1493WD 12Add BLAST31
Repeati1504 – 1534WD 13Add BLAST31
Repeati1545 – 1575WD 14Add BLAST31
Repeati1586 – 1616WD 15Add BLAST31
Repeati1627 – 1657WD 16Add BLAST31

Sequence similaritiesi

Contains 16 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

InParanoidiQ55563.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
2.130.10.10. 3 hits.
3.40.50.300. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR027417. P-loop_NTPase.
IPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 15 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 16 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
SSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 8 hits.
PS50082. WD_REPEATS_2. 15 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q55563-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVMLSCLTQ QQELLQSLAD RVGQPAIQDN LYFCLAGQFT WVEDWYTTAI
60 70 80 90 100
AGDVLIFDAG EKEQLARVLQ QWEQFTGHVI LITGLTEEPD PQTFLTQLAL
110 120 130 140 150
GKQQRCGERH FHWIVLVDPT IEEAFRGLQT FLDGKSHWLD LRLGVGDLEQ
160 170 180 190 200
CTDELWQCVW LEPSPLAPEK RQEMLVNLPH WLAEIVDQKQ NLELEPISLL
210 220 230 240 250
QAKLSLLQGL ARESRGEMGR KQAQCHYRES LDVWELLGDT EAIIWLSLRL
260 270 280 290 300
GYLFLLQAYG EKSRGHQLWQ QTRNYAQTAI AALENQQWHF THGETLNLLG
310 320 330 340 350
EILRGLEDWE QLRQAAENSL IFFYQLSPFA ATDTTPERNQ EKLWTELELQ
360 370 380 390 400
GLISLAHSYL CEALVEQWKF DEGKEALKRA FETRPKQVEE RDYRPCLANL
410 420 430 440 450
HYLAGRVQLA NDQIRESLMT LRQAQTLVSF EDNPRLYLAI LVELRECYLQ
460 470 480 490 500
LEDWLAALAI DQEYQAREYR LGQRAFIGPK PLPCWPEQRI CRHPLAPEKM
510 520 530 540 550
LGGGAEARSA VQSKTMVSLT WQDLQKVWEQ KPTPVLVLTG EPGVGKTSWL
560 570 580 590 600
AGEVLQQMSP ERVLLVDFTP HWAEKLWVHL GESFSLPSLG QATTPELVSA
610 620 630 640 650
LQALPILDLL LVLDGENGSL PWQKSPSLRQ QELAQVLWQW LLTTSPSQGV
660 670 680 690 700
RLLISVPPTA IADLYEELKG QLGEEHSLPP LQYQTLSPPT LGQAENWLTQ
710 720 730 740 750
AMAQCRHPWP PSLQSQFLGD LAMEGNGEQQ PWLHPIDLQL LGTVLEQEQV
760 770 780 790 800
TKSADYQGKK LDEWLTLAVQ TYLAFLPPHL LKKALQLLKS LADGQQALCL
810 820 830 840 850
KTEYQLLAAL YSAPEPAADN PPEFAQEDIQ QLQLLLTLLL RGRLIIVISQ
860 870 880 890 900
ATLPYYRLST THLAHALQGK SAVISTPALI NAGRRGSKSN PNLIAPSPGD
910 920 930 940 950
RQQGNEDLIA ELEAGSSAEE QVVAQKLKAA QLQYQKLVAG INLEKQCQFI
960 970 980 990 1000
LKQFLVYPLE ALLAAVKTGQ DLQKLVTPET PLVQYPSLAP WLSLHSILAR
1010 1020 1030 1040 1050
INECNRCHHE GPVTVLRISP SMENTPPLVL TATTNGIAYL WSFHGELINV
1060 1070 1080 1090 1100
LRGHQEAITA LDWSADGQYF ATASADHTVK LWQRHGEEVA TLRGHEDWVR
1110 1120 1130 1140 1150
SVHFSPHHQF LVTSGQDNTA RIWNFAGEQL TLCQGHADWV RNAEFNCHGQ
1160 1170 1180 1190 1200
ILLTASRDGT ARLWDLEGRE IGLCQGHTSW VRNAQFSPDG QWIVTCSADG
1210 1220 1230 1240 1250
TARLWDLSSQ CFAVLKGHQN WVNNALWSPD GQHIITSSSD GTARVWSRHG
1260 1270 1280 1290 1300
KCLGTLRGHD HNIHGARFSL DGQKIVTYST DNTARLWTKE GTLLTILRGH
1310 1320 1330 1340 1350
QKEVYDADFS ADGRFVFTVS ADQTARQWDI SQKDTITLTG HSHWVRNAHF
1360 1370 1380 1390 1400
NPKGDRLLTV SRDKTARLWT TEGECVAVLA DHQGWVREGQ FSPDGQWIVT
1410 1420 1430 1440 1450
GSADKTAQLW NVLGKKLTVL RGHQDAVLNV RFSPDSQYIV TASKDGTARV
1460 1470 1480 1490 1500
WNNTGRELAV LRHYEKNIFA AEFSADGQFI VTASDDNTAG IWEIVGREVG
1510 1520 1530 1540 1550
ICRGHEGPVY FAQFSADSRY ILTASVDNTA RIWDFLGRPL LTLAGHQSIV
1560 1570 1580 1590 1600
YQARFSPEGN LIATVSADHT ARLWDRSGKT VAVLYGHQGL VGTVDWSPDG
1610 1620 1630 1640 1650
QMLVTASNDG TARLWDLSGR ELLTLEGHGN WVRSAEFSPD GRWVLTSSAD
1660 1670 1680 1690
GTAKLWPVKT LPQLLSQGGQ WLKNYLTHNA LVSPADRPGA KVT
Length:1,693
Mass (Da):189,935
Last modified:November 1, 1996 - v1
Checksum:i0977A827A0251CFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10064.1.
PIRiS76086.

Genome annotation databases

EnsemblBacteriaiBAA10064; BAA10064; BAA10064.
KEGGisyn:sll0163.
PATRICi23841554. VBISynSp132158_2325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10064.1.
PIRiS76086.

3D structure databases

ProteinModelPortaliQ55563.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55563. 2 interactors.

Proteomic databases

PRIDEiQ55563.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10064; BAA10064; BAA10064.
KEGGisyn:sll0163.
PATRICi23841554. VBISynSp132158_2325.

Phylogenomic databases

InParanoidiQ55563.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
2.130.10.10. 3 hits.
3.40.50.300. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR027417. P-loop_NTPase.
IPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 15 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 16 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
SSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 8 hits.
PS50082. WD_REPEATS_2. 15 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY163_SYNY3
AccessioniPrimary (citable) accession number: Q55563
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.