Unreviewed, UniProtKB/TrEMBL Q55544 (Q55544_SYNY3)

Names and origin

Protein names

Submitted name:
    Phycobilisome LCM core-membrane linker polypeptide EMBL BAA10042.1

Gene names

Name:	apcE EMBL BAA10042.1
Ordered Locus Names:	slr0335

Organism

Synechocystis sp. (strain PCC 6803) [Complete proteome] [HAMAP]

Taxonomic identifier

1148 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechocystis

Protein attributes

Sequence length	896 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	photosynthesis Inferred from electronic annotation. Source: InterPro
Cellular component	phycobilisome Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
trxA	P52231	1	EBI-862826,EBI-862916

Sequences

	Sequence		Length	Mass (Da)
	Q55544-1 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 05D4358C5F0BCD8C	FASTA	896	100,296
	10 20 30 40 50 60 MSVKASGGSS LARPQLYQTV PVSAISQAEQ QDRFLEGSEL NELTAYFQSG ALRLEIAETL 70 80 90 100 110 120 TQNADLIVSR AANRIFTGGS PLSYLEKPVE RQPALVGASS DSRNGSVTYA ESNGSGGLFG 130 140 150 160 170 180 GLRSVFSSTG PIPPGFRPIN IARYGPSNMQ KSLRDMSWFL RYTTYAIVAG DPNIIVVNTR 190 200 210 220 230 240 GLKEVIENAC SIDATIVAIQ EMRAASADYF RNNAQAKEIV LQYFDILLSE FKAPTPANKV 250 260 270 280 290 300 RQGPSNDIQG LELPQSYFNA AAKRQKYAMK PGLSALEKNA VIKAAYRQIF ERDITKAYSQ 310 320 330 340 350 360 SISYLESQVR NGDISMKEFV RRLAKSPLYR KQFFEPFINS RALELAFRHI LGRGPSSREE 370 380 390 400 410 420 VQKYFSIVSS GGLPALVDAL VDSQEYADYF GEETVPYLRG LGVEAQECRN WGMQQDLFSY 430 440 450 460 470 480 SAPFRKVPQF ITTFAQYDRP LPDQHVYGSG NDPLEIQFGA IFPKETRNPS KRPAPFNKDT 490 500 510 520 530 540 KRILIHRGPA VNNQVGNPSA VGEFPGSLGA KVFRLNGGLP GAKVGKNTGT SVKFGESSTQ 550 560 570 580 590 600 ALIRAAYRQV FGRDLYEGQR LSVAEIQLEN GDISVREFIK RLAKSELFLK LYWAPHYVCK 610 620 630 640 650 660 AIEYMHRRLL GRPTYGRQEM NQYFDIASKQ GFYAVVEAMI DSKEYSDAFG EDTVPYERYL 670 680 690 700 710 720 TPGGLQMRSA RVGSLREDIG QRVDKEVTPR FVELGQVSAI RTEPEIAYRS NQGVTRQRQQ 730 740 750 760 770 780 TKVFKLVSTY DKVAVKNAIR AAYRQVFERD LEPYIINSEF TALESKLSNN EINVKEFIEG 790 800 810 820 830 840 LGTSELYMKE FYAPYPNTKV IEMGTKHFLG RAPLNQKEIQ QYNQILASQG LKAFIGAMVN 850 860 870 880 890 GMEYLQTFGE DTVPYRRFPT LPAANFPNTE RLYNKLTKQD KELVVPSFTP VVKVGG

References

[1]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed: 8905231] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	BA000022 Genomic DNA. Translation: BAA10042.1.
PIR	S76064.
RefSeq	NP_441972.1.
3D structure databases
HSSP	HSSP built from PDB template 1ALL based on UniProtKB P72505.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q55544. 10 interactions.
Genome annotation databases
GeneID	954931.
GenomeReviews	Gene locus slr0335 in contig BA000022_GR.
KEGG	syn:slr0335.
NMPDR	fig|1148.1.peg.2073.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q55544.
OMA	Q55544. QIFERDI.
Enzyme and pathway databases
BioCyc	SSP1148:SLR0335-MON.
Family and domain databases
InterPro	IPR001297. PBS_linker_poly. IPR012128. Phycobilisome_A_B. [Graphical view]
Gene3D	G3DSA:1.10.490.20. Phycobilisome. 1 hit.
Pfam	PF00427. PBS_linker_poly. 3 hits. PF00502. Phycobilisome. 2 hits. [Graphical view]
ProDom	PD000852. PBS_linker_poly. 3 hits. PD000340. Phycobilisome. 2 hits. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

Q55544_SYNY3

Accession

Primary (citable) accession number: Q55544

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	May 5, 2009
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)