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Protein
Submitted name:

NADH dehydrogenase subunit 5

Gene

ndhF

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
NADH dehydrogenase subunit 5Imported
Gene namesi
Name:ndhFImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 28HelicalSequence analysisAdd BLAST17
Transmembranei40 – 62HelicalSequence analysisAdd BLAST23
Transmembranei90 – 110HelicalSequence analysisAdd BLAST21
Transmembranei122 – 148HelicalSequence analysisAdd BLAST27
Transmembranei185 – 203HelicalSequence analysisAdd BLAST19
Transmembranei286 – 306HelicalSequence analysisAdd BLAST21
Transmembranei318 – 341HelicalSequence analysisAdd BLAST24
Transmembranei347 – 365HelicalSequence analysisAdd BLAST19
Transmembranei377 – 399HelicalSequence analysisAdd BLAST23
Transmembranei411 – 431HelicalSequence analysisAdd BLAST21
Transmembranei452 – 476HelicalSequence analysisAdd BLAST25
Transmembranei496 – 517HelicalSequence analysisAdd BLAST22
Transmembranei567 – 589HelicalSequence analysisAdd BLAST23
Transmembranei595 – 614HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

IntActiQ55465. 2 interactors.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini70 – 126Proton_antipo_NInterPro annotationAdd BLAST57
Domaini139 – 424Proton_antipo_MInterPro annotationAdd BLAST286

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOGENOMiHOG000100571.
KOiK05577.
OMAiWYAQPLV.
PhylomeDBiQ55465.

Family and domain databases

InterProiIPR010217. NADP_DH_NdhF3_su.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01960. ndhF3_CO2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q55465-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDFLLQSSW FIPFYGLIGS ILSLPWSFRL IKQTGPRPAA YFNVFMTLVS
60 70 80 90 100
AIHGMVALSA IWQTPSEQIV FHWLQVADLD LTLAVEISPV SLGALSVVTG
110 120 130 140 150
ISFLVQIFGL GYMEKDWSLA RFYGLLGFFE AALGGIALSD SLFLSYGLLE
160 170 180 190 200
MLTLSTYLLV GFWYAQPLVV TAARDAFLTK RVGDIILLMG VVALSSYGQG
210 220 230 240 250
LTFSQLDNWA STVPVTGITA TLLGLSLIAG PTGKCAQFPL NLWLDEAMEG
260 270 280 290 300
PNPAGIMRNS VVVSAGAYVL IKLQPVFTLS PIASKTLIVL GTLTVVMTSL
310 320 330 340 350
IAIAQIDIKR TLSHSTSVYL GLVFIAVGLG QVDIAFLLLF AHAIAKALLF
360 370 380 390 400
MSIGSIIFTT SGQNITEMGG LWNRMPVTTT SFVVGSAGLL AVFPLGMFWT
410 420 430 440 450
WQKWFSGDWL VSWPLLALLI FVNLFSALNL TRVFRLVFLG KPQPKTRRAP
460 470 480 490 500
EVPWPMAVPM VSLIIVTLLV PIAPLQWSFW LSATYPLGLT SPVTQWAMPL
510 520 530 540 550
LMVAGITGIL LGSLMPLRRN LSRSSRLPVR FLQDLFAYDV YLDKIYGATV
560 570 580 590 600
VAAVAAIAKI STWFDRYVID GIVNLVSLVT IFSGSALKYN VTGQSQFYLL
610 620 630
TILVGVALLI WFSLSGQWMA IRQFWSSWLS LILP
Length:634
Mass (Da):69,363
Last modified:November 1, 1996 - v1
Checksum:i269F8314CCDE1479
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10809.1.
PIRiS75962.

Genome annotation databases

EnsemblBacteriaiBAA10809; BAA10809; BAA10809.
KEGGisyn:sll0026.
PATRICi23843228. VBISynSp132158_3152.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10809.1.
PIRiS75962.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55465. 2 interactors.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10809; BAA10809; BAA10809.
KEGGisyn:sll0026.
PATRICi23843228. VBISynSp132158_3152.

Phylogenomic databases

HOGENOMiHOG000100571.
KOiK05577.
OMAiWYAQPLV.
PhylomeDBiQ55465.

Family and domain databases

InterProiIPR010217. NADP_DH_NdhF3_su.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01960. ndhF3_CO2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ55465_SYNY3
AccessioniPrimary (citable) accession number: Q55465
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.