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Protein
Submitted name:

NADH dehydrogenase subunit 4

Gene

ndhD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

NADUniRule annotation, NADPUniRule annotation, PlastoquinoneUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
NADH dehydrogenase subunit 4Imported
Gene namesi
Name:ndhDImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2217HelicalSequence analysisAdd
BLAST
Transmembranei31 – 5222HelicalSequence analysisAdd
BLAST
Transmembranei72 – 9625HelicalSequence analysisAdd
BLAST
Transmembranei108 – 12619HelicalSequence analysisAdd
BLAST
Transmembranei132 – 15019HelicalSequence analysisAdd
BLAST
Transmembranei162 – 18322HelicalSequence analysisAdd
BLAST
Transmembranei203 – 22826HelicalSequence analysisAdd
BLAST
Transmembranei240 – 26425HelicalSequence analysisAdd
BLAST
Transmembranei270 – 29122HelicalSequence analysisAdd
BLAST
Transmembranei298 – 31720HelicalSequence analysisAdd
BLAST
Transmembranei329 – 34719HelicalSequence analysisAdd
BLAST
Transmembranei368 – 39326HelicalSequence analysisAdd
BLAST
Transmembranei405 – 43127HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

QuinoneUniRule annotation

Interactioni

Protein-protein interaction databases

IntActiQ55464. 2 interactions.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini126 – 419294Proton_antipo_MInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOGENOMiHOG000100683.
InParanoidiQ55464.
KOiK05575.
OMAiSIAHMAY.
PhylomeDBiQ55464.

Family and domain databases

InterProiIPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

Q55464-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSALIWGPI FGAILIAIIP NPDHDCYSRK IALGIMVAMA GLSVLLAGQF
60 70 80 90 100
NISDPQMQFV EYYPWLPSLG LNYHLGVDGL SLPLLLLNSA LVVIAIFSTN
110 120 130 140 150
TEIERPRFYY ALLLLLSGGV AGAFLAQDLL LFFLFFELEI IPLYFLIAIW
160 170 180 190 200
GGQRRGYAAM KFLLYTALSG FLVLVSFLGW FWLTKAPNFD YNPSLADALP
210 220 230 240 250
VKTQMLLLLP LLLGLGIKIP IFPFHTWLPD AHVEASTPVS VLLAGVLLKL
260 270 280 290 300
GTYGLLRFGL GLYLEAWVEF APYLATLAAI SALYGASCAI AQKDMKKVVA
310 320 330 340 350
YSSIAHMGYI LLAAAAATRL SVTAASAQMV SHGIISALLF LLVGVVYKKT
360 370 380 390 400
GSRDVDKLQG LLTPERGLPI TGSLMILGVM ASAGIPGMVG FIAEFLVFRG
410 420 430 440 450
SFPIFPTQTL LCLIGSGLTA VYFLLMINRV FFGRLTMELS HLPKVRWQEQ
460 470 480 490 500
IPAIALAVVI IALGIQPHWL TQWSEPQTAV LLTGHPDLVS VPAPPRIEIE

VKELGEV
Length:507
Mass (Da):55,160
Last modified:November 1, 1996 - v1
Checksum:i67384DCC4C7054A4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10808.1.
PIRiS75961.

Genome annotation databases

EnsemblBacteriaiBAA10808; BAA10808; BAA10808.
KEGGisyn:sll0027.
PATRICi23843224. VBISynSp132158_3150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10808.1.
PIRiS75961.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55464. 2 interactions.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10808; BAA10808; BAA10808.
KEGGisyn:sll0027.
PATRICi23843224. VBISynSp132158_3150.

Phylogenomic databases

HOGENOMiHOG000100683.
InParanoidiQ55464.
KOiK05575.
OMAiSIAHMAY.
PhylomeDBiQ55464.

Family and domain databases

InterProiIPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / KazusaImported.

Entry informationi

Entry nameiQ55464_SYNY3
AccessioniPrimary (citable) accession number: Q55464
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 16, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.