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Protein

Thylakoid membrane protein slr0575

Gene

slr0575

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Thylakoid membrane protein slr0575
Gene namesi
Ordered Locus Names:slr0575
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Subcellular locationi

Cellular thylakoid membrane 1 Publication; Multi-pass membrane protein 1 Publication

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei5 – 2521HelicalSequence AnalysisAdd
BLAST
Transmembranei31 – 5121HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. thylakoid membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 184184Thylakoid membrane protein slr0575PRO_0000352748Add
BLAST

Proteomic databases

PaxDbiQ55403.

Interactioni

Protein-protein interaction databases

STRINGi1148.slr0575.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG09668.
InParanoidiQ55403.
OMAiTDDGKYS.
OrthoDBiEOG6HJ26K.
PhylomeDBiQ55403.

Family and domain databases

InterProiIPR021275. DUF2854.
[Graphical view]
PfamiPF11016. DUF2854. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q55403-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPKISLAAV GLTVGGILTI TGFVAYALDY ATLNLAGFFY GIPLVLGGLA
60 70 80 90 100
LKAAELKPIP FSQPTSEKII ALRNQLATPT QNQIRKDVTR YRYGQEAHLD
110 120 130 140 150
ESLERLGLSP TDEERPVLTS LLEQDWEGKY VLTLTFTSPF ISLETWQEKQ
160 170 180
EKIAKFFGPD LEVTVAEPEE KVVTVNLISQ LALP
Length:184
Mass (Da):20,320
Last modified:November 1, 1996 - v1
Checksum:iC419300F91AE0CD2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10497.1.
PIRiS75762.
RefSeqiNP_442427.1. NC_000911.1.
YP_005652488.1. NC_017277.1.
YP_007452303.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA10497; BAA10497; BAA10497.
GeneIDi953219.
KEGGisyn:slr0575.
PATRICi23842554. VBISynSp132158_2816.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10497.1.
PIRiS75762.
RefSeqiNP_442427.1. NC_000911.1.
YP_005652488.1. NC_017277.1.
YP_007452303.1. NC_020286.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1148.slr0575.

Proteomic databases

PaxDbiQ55403.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10497; BAA10497; BAA10497.
GeneIDi953219.
KEGGisyn:slr0575.
PATRICi23842554. VBISynSp132158_2816.

Phylogenomic databases

eggNOGiNOG09668.
InParanoidiQ55403.
OMAiTDDGKYS.
OrthoDBiEOG6HJ26K.
PhylomeDBiQ55403.

Family and domain databases

InterProiIPR021275. DUF2854.
[Graphical view]
PfamiPF11016. DUF2854. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.
  2. "Proteomic studies of the thylakoid membrane of Synechocystis sp. PCC 6803."
    Srivastava R., Pisareva T., Norling B.
    Proteomics 5:4905-4916(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION IN THYLAKOID.

Entry informationi

Entry nameiY575_SYNY3
AccessioniPrimary (citable) accession number: Q55403
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: November 1, 1996
Last modified: January 7, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.