Reviewed, UniProtKB/Swiss-Prot Q55153 (Y060_SYNY3)

Names and origin

Protein names

Recommended name:
    UPF0118 membrane protein sll0060

Gene names

Ordered Locus Names:

sll0060

Organism

Synechocystis sp. (strain PCC 6803) [Complete proteome] [HAMAP]

Taxonomic identifier

1148 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechocystis

Protein attributes

Sequence length	344 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Subcellular location	Cell membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the UPF0118 (perM) family.

Ontologies

Keywords
Cellular component	Cell membrane Membrane
Domain	Transmembrane
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-SubCell plasma membrane Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 344	344	UPF0118 membrane protein sll0060		PRO_0000148320
Regions
	Transmembrane	14 – 34	21	Potential
	Transmembrane	41 – 61	21	Potential
	Transmembrane	72 – 92	21	Potential
	Transmembrane	155 – 175	21	Potential
	Transmembrane	215 – 235	21	Potential
	Transmembrane	237 – 257	21	Potential
	Transmembrane	262 – 282	21	Potential
	Transmembrane	310 – 330	21	Potential

Sequences

	Sequence		Length	Mass (Da)
	Q55153-1 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 046CE5E52E0BA495	FASTA	344	38,810
	10 20 30 40 50 60 MNWPNMPPGD RRWLWIGLTL PLCLLNGWVL LQILDYFQSP LRIFIIANLV AFILGYPVRW 70 80 90 100 110 120 LQRYPRLKLP YAVALVLLTT AIILAVIGLL VIPKLVDQIR TVLQLLPHLN ALGDRHLESL 130 140 150 160 170 180 DNLSNQWEIP TNFRAWGREL SNEFPNQIRS ITNQLINLLI WTAGSLVEAG FIFIMTVYLL 190 200 210 220 230 240 LRGQTFWDGI FRWLPIDWRH KVRQRLRHSF QNYYIGQATV AALLGVSLII SLSIFQVPLA 250 260 270 280 290 300 LLFGMFVGFM AFFPFGGGTS IVLISIIASF QSIWLGIKVL AIATVVDQVV ENGLAPKLLG 310 320 330 340 RVTGVHPVWI LLSLMIGAKV AGLLGILVAI PIASFIRDML NDFI

References

[1]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome." Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S. DNA Res. 2:153-166(1995) [PubMed: 8590279] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed: 8905231] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	BA000022 Genomic DNA. Translation: BAA10289.1.
PIR	S74371.
RefSeq	NP_442219.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q55153.
Genome annotation databases
GeneID	952578.
GenomeReviews	Gene locus sll0060 in contig BA000022_GR.
KEGG	syn:sll0060.
NMPDR	fig|1148.1.peg.2320.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q55153.
Enzyme and pathway databases
BioCyc	SSP1148:SLL0060-MON.
Family and domain databases
InterPro	IPR002549. UPF0118. [Graphical view]
PANTHER	PTHR21716. UPF0118. 1 hit.
Pfam	PF01594. UPF0118. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y060_SYNY3

Accession

Primary (citable) accession number: Q55153

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 1, 2000
Last sequence update:	November 1, 1996
Last modified:	October 13, 2009
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)