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Q55153 (Y060_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UPF0118 membrane protein sll0060
Gene names
Ordered Locus Names:sll0060
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechocystis

Protein attributes

Sequence length344 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the UPF0118 (perM) family.

Ontologies

Keywords
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 344344UPF0118 membrane protein sll0060
PRO_0000148320

Regions

Transmembrane14 – 3421Helical; Potential
Transmembrane41 – 6121Helical; Potential
Transmembrane72 – 9221Helical; Potential
Transmembrane155 – 17521Helical; Potential
Transmembrane215 – 23521Helical; Potential
Transmembrane237 – 25721Helical; Potential
Transmembrane262 – 28221Helical; Potential
Transmembrane310 – 33021Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
Q55153 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 046CE5E52E0BA495

FASTA34438,810
        10         20         30         40         50         60 
MNWPNMPPGD RRWLWIGLTL PLCLLNGWVL LQILDYFQSP LRIFIIANLV AFILGYPVRW 

        70         80         90        100        110        120 
LQRYPRLKLP YAVALVLLTT AIILAVIGLL VIPKLVDQIR TVLQLLPHLN ALGDRHLESL 

       130        140        150        160        170        180 
DNLSNQWEIP TNFRAWGREL SNEFPNQIRS ITNQLINLLI WTAGSLVEAG FIFIMTVYLL 

       190        200        210        220        230        240 
LRGQTFWDGI FRWLPIDWRH KVRQRLRHSF QNYYIGQATV AALLGVSLII SLSIFQVPLA 

       250        260        270        280        290        300 
LLFGMFVGFM AFFPFGGGTS IVLISIIASF QSIWLGIKVL AIATVVDQVV ENGLAPKLLG 

       310        320        330        340 
RVTGVHPVWI LLSLMIGAKV AGLLGILVAI PIASFIRDML NDFI

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
DNA Res. 2:153-166(1995) [PubMed: 8590279] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed: 8905231] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000022 Genomic DNA. Translation: BAA10289.1.
PIRS74371.
RefSeqNP_442219.1. NC_000911.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ55153.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID952578.
GenomeReviewsGene locus sll0060 in contig BA000022_GR.
KEGGsyn:sll0060.
NMPDRfig|1148.1.peg.2320.
PATRIC23842066. VBISynSp132158_2574.

Phylogenomic databases

eggNOGCOG0628.
HOGENOMHBG708550.
PhylomeDBQ55153.

Enzyme and pathway databases

BioCycSSP1148:SLL0060-MONOMER.

Family and domain databases

InterProIPR002549. UPF0118.
[Graphical view]
PANTHERPTHR21716. UPF0118. 1 hit.
PfamPF01594. UPF0118. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY060_SYNY3
AccessionPrimary (citable) accession number: Q55153
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: November 1, 1996
Last modified: January 25, 2012
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families

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