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Q55119 (EFP_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 95. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor P

Short name=EF-P
Gene names
Name:efp
Ordered Locus Names:slr0434
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length187 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase By similarity. HAMAP-Rule MF_00141

Pathway

Protein biosynthesis; polypeptide chain elongation. HAMAP-Rule MF_00141

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00141.

Sequence similarities

Belongs to the elongation factor P family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   Molecular functionElongation factor
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processpeptide biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontranslation elongation factor activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 187187Elongation factor P HAMAP-Rule MF_00141
PRO_0000094354

Sequences

Sequence LengthMass (Da)Tools
Q55119 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: B7D900A822B94938

FASTA18720,406
        10         20         30         40         50         60 
MISSNDFRTG TSIVMDGAVW KVVEFLHVKP GKGSAFVRTK LKSVQTGNVV EKTFRAGETV 

        70         80         90        100        110        120 
PQANIEKSVM QHTYKDGDQY VFMDMETFEE VSIAPDTLGD KAKFIKEEME VSVVTWDGTI 

       130        140        150        160        170        180 
LDVELPTSVV LEIVETDPGV KGDTATGGTK PAILETGAQV MVPLFIAQGE RIKVDTRDGS 


YLGRDNA 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA10251.1.
PIRS74333.
RefSeqNP_442181.1. NC_000911.1.
YP_005652240.1. NC_017277.1.
YP_007452057.1. NC_020286.1.

3D structure databases

ProteinModelPortalQ55119.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ55119. 1 interaction.
STRING1148.slr0434.

Proteomic databases

PaxDbQ55119.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA10251; BAA10251; BAA10251.
GeneID12253458.
14617733.
952603.
KEGGsyn:slr0434.
syy:SYNGTS_2287.
syz:MYO_123110.
PATRIC23841984. VBISynSp132158_2534.

Phylogenomic databases

eggNOGCOG0231.
HOGENOMHOG000010048.
KOK02356.
OMAILETGAQ.
OrthoDBEOG6JQH6Q.
PhylomeDBQ55119.
ProtClustDBPRK00529.

Enzyme and pathway databases

UniPathwayUPA00345.

Family and domain databases

Gene3D2.30.30.30. 1 hit.
2.40.50.140. 2 hits.
HAMAPMF_00141. EF_P.
InterProIPR015365. Elong-fact-P_C.
IPR012340. NA-bd_OB-fold.
IPR014722. Rib_L2_dom2.
IPR020599. Transl_elong_fac_P/YeiP.
IPR013185. Transl_elong_KOW-like.
IPR001059. Transl_elong_P/YeiP_cen.
IPR013852. Transl_elong_P/YeiP_CS.
IPR011768. Transl_elongation_fac_P.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PfamPF01132. EFP. 1 hit.
PF08207. EFP_N. 1 hit.
PF09285. Elong-fact-P_C. 1 hit.
[Graphical view]
PIRSFPIRSF005901. EF-P. 1 hit.
SMARTSM00841. Elong-fact-P_C. 1 hit.
[Graphical view]
SUPFAMSSF50104. SSF50104. 1 hit.
SSF50249. SSF50249. 2 hits.
TIGRFAMsTIGR00038. efp. 1 hit.
PROSITEPS01275. EFP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameEFP_SYNY3
AccessionPrimary (citable) accession number: Q55119
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 16, 2014
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways