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Protein

Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408

Gene

sll0408

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII (By similarity).By similarity

Catalytic activityi

Peptidylproline (omega=180) = peptidylproline (omega=0).

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase, Rotamase

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 (EC:5.2.1.8)
Short name:
Putative thylakoid lumen PPIase
Alternative name(s):
Putative thylakoid lumen rotamase
Gene namesi
Ordered Locus Names:sll0408
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3333Sequence AnalysisAdd
BLAST
Chaini34 – 379346Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408PRO_0000352737Add
BLAST

Proteomic databases

PaxDbiQ55118.

Interactioni

Protein-protein interaction databases

IntActiQ55118. 3 interactions.
STRINGi1148.SYNGTS_2286.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini190 – 378189PPIase cyclophilin-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 PPIase cyclophilin-type domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0652.
InParanoidiQ55118.
KOiK01802.
OMAiRNAAFGY.
OrthoDBiEOG6CVV84.
PhylomeDBiQ55118.

Family and domain databases

Gene3Di1.20.120.290. 1 hit.
2.40.100.10. 1 hit.
InterProiIPR029000. Cyclophilin-like_dom.
IPR024936. Cyclophilin-type_PPIase.
IPR002130. Cyclophilin-type_PPIase_dom.
IPR023222. PsbQ-like_domain.
[Graphical view]
PANTHERiPTHR11071. PTHR11071. 1 hit.
PfamiPF00160. Pro_isomerase. 1 hit.
[Graphical view]
SUPFAMiSSF101112. SSF101112. 1 hit.
SSF50891. SSF50891. 2 hits.
PROSITEiPS50072. CSA_PPIASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q55118-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIIKTPLGI ITRRGLQLSL LSLLLTMLSL TWAMPGWSLP LNQPMLLGAL
60 70 80 90 100
AQGNAITDPN AILRYALPID NPEVRRLQDS LEDISNHIRA KRWPAIKKDV
110 120 130 140 150
RAANLTITLK EDKILAGVPA DRQPEAETLL GSIKTDLTAL TEAVEAKDKE
160 170 180 190 200
QVISFRKSAL TAIGDLEALM VTDFPFAIPE EFANLPQLKG RATVEMTTNK
210 220 230 240 250
GPLTIVVDGY SAPINAGNFV DLVQRKFYDG LPFIRSEDFF VTQAGDPPGP
260 270 280 290 300
EAGFIDPQTK EYRAIPLEIL VKGEEGPIYG MTLEDAGMYL PELALPFNAY
310 320 330 340 350
GAIALARPET EPNGGSSQFF FFKFDTELTP PGFNLMDGRY SVFGYVVDGK
360 370
ETLEQLSEGD KIVSAKVISG ADNLVNGNS
Length:379
Mass (Da):41,386
Last modified:October 14, 2008 - v2
Checksum:i0C0E52879ECE5B58
GO

Sequence cautioni

The sequence BAA10250.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10250.1. Different initiation.
PIRiS74332.
RefSeqiYP_005652239.1. NC_017277.1.
YP_007452056.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA10250; BAA10250; BAA10250.
KEGGisyn:sll0408.
PATRICi23841982. VBISynSp132158_2533.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA10250.1. Different initiation.
PIRiS74332.
RefSeqiYP_005652239.1. NC_017277.1.
YP_007452056.1. NC_020286.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ55118. 3 interactions.
STRINGi1148.SYNGTS_2286.

Proteomic databases

PaxDbiQ55118.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA10250; BAA10250; BAA10250.
KEGGisyn:sll0408.
PATRICi23841982. VBISynSp132158_2533.

Phylogenomic databases

eggNOGiCOG0652.
InParanoidiQ55118.
KOiK01802.
OMAiRNAAFGY.
OrthoDBiEOG6CVV84.
PhylomeDBiQ55118.

Family and domain databases

Gene3Di1.20.120.290. 1 hit.
2.40.100.10. 1 hit.
InterProiIPR029000. Cyclophilin-like_dom.
IPR024936. Cyclophilin-type_PPIase.
IPR002130. Cyclophilin-type_PPIase_dom.
IPR023222. PsbQ-like_domain.
[Graphical view]
PANTHERiPTHR11071. PTHR11071. 1 hit.
PfamiPF00160. Pro_isomerase. 1 hit.
[Graphical view]
SUPFAMiSSF101112. SSF101112. 1 hit.
SSF50891. SSF50891. 2 hits.
PROSITEiPS50072. CSA_PPIASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.
  2. "Proteomic studies of the thylakoid membrane of Synechocystis sp. PCC 6803."
    Srivastava R., Pisareva T., Norling B.
    Proteomics 5:4905-4916(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION IN THYLAKOID.

Entry informationi

Entry nameiPPI3_SYNY3
AccessioniPrimary (citable) accession number: Q55118
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 24, 2015
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.