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Protein
Submitted name:

Cho-Orf1

Gene

cho-orf1

Organism
Streptomyces sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi230 – 249H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cho-Orf1Imported
Gene namesi
Name:cho-orf1Imported
OrganismiStreptomyces sp.Imported
Taxonomic identifieri1931 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

ProteinModelPortaliQ55104.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini206 – 271HTH luxR-type DNA-bindingInterPro annotationAdd BLAST66

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011990. TPR-like_helical_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiView protein in PROSITE
PS50043. HTH_LUXR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q55104-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAVVLVALQ TRDAELARRL LSHRREGDGH GYRPSSLQLI RGSNAAARGD
60 70 80 90 100
LPTALEYFLD WGRAAERADW CNPAVFPWRS WAAGLHYRLG RPDHAHDLVD
110 120 130 140 150
EEYERAVAWG TPVAIGRAQR VKGAVTEGER GIELLRESAA TLDRSVNAME
160 170 180 190 200
RARTALLLGR RLQAAGRPAE AEVRLRQARD QALACGAPWI VERARRELHT
210 220 230 240 250
MASGHTSLAV EALTPTERRV AGLAAHGAAN KDIAEQLDVS SRAVEKHLTR
260 270
AYRKLQVGGR TELAALAHLL PGPTAAVRP
Length:279
Mass (Da):30,515
Last modified:November 1, 1996 - v1
Checksum:i27B7566CB622536F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13457 Genomic DNA. Translation: BAA02713.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13457 Genomic DNA. Translation: BAA02713.1.

3D structure databases

ProteinModelPortaliQ55104.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011990. TPR-like_helical_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiView protein in PROSITE
PS50043. HTH_LUXR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ55104_STRSQ
AccessioniPrimary (citable) accession number: Q55104
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 15, 2017
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.