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Protein
Submitted name:

Cho-Orf3

Gene

cho-orf3

Organism
Streptomyces sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cho-Orf3Imported
Gene namesi
Name:cho-orf3Imported
OrganismiStreptomyces sp.Imported
Taxonomic identifieri1931 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

ProteinModelPortaliQ55102.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini810 – 87566HTH luxR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011990. TPR-like_helical_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF48452. SSF48452. 2 hits.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q55102-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPLPGRRDE EDLLNSLLSA LRRGRPALVG VHGPPGIGRS ALLDRAAALA
60 70 80 90 100
ERAGVRTVAA QACREETDLP HGVAEQLHAA LGTGRQPADL CRALLAAARE
110 120 130 140 150
QPLLVVVDDV QWADTPSLRA LQALARRLAG TSLMLLTARS DALPPGPDDR
160 170 180 190 200
IEPCPLTDGH AVARHTLDLG PLTQDAVGEI LGRAWGTAVD PGFREAAAQA
210 220 230 240 250
VEGNPMVLRS VVRRFGRHGW RPWVDHLPHL TDSAAEAVRE RTLRTLAMLP
260 270 280 290 300
EELLDVLRVV AAAGEDCSTG MIASLAEPRT TGAARALTLL SGTGLLTPGP
310 320 330 340 350
RPAFREPKAA EAVLARLSTE RREELHARAA DWAHRWAVPD SGVARMLLGA
360 370 380 390 400
RVLGAAWAVD VLRREAARCR LAGKRAAAAR LLQRALREPM PPPLRVRLLT
410 420 430 440 450
ELSAAVLLSE PEAADRHLRQ ALLVPADAGA GPFWVRAAEL LVARGDVVAA
460 470 480 490 500
QPLIAQCIGR TEPGSADRAA LRALYWLAEQ SQPEAAHELD RPPVDELPEL
510 520 530 540 550
PEQPAEAAAA AWRTALLGRD VDRARQLARA ALGPEARPVV PPTLQVAACH
560 570 580 590 600
ALVLSGDFAE ARAALDRVLV YAEHTDSRAV AGLALLVAGL TELRRERPEA
610 620 630 640 650
ATVALARAQE VMPPHCWHPL MTPGLVALMA LRYLERGDRA AAGRSLALAR
660 670 680 690 700
PAGAEGGLAW AYLLYTRGRV RLAGGQREEA LADLLECGRL LLARRVTNPA
710 720 730 740 750
LLPWRSAAAL AHGPAPDCPV AAGLLAEERR LALAWGAPGV VTESLLGTLT
760 770 780 790 800
GGRLHHTHPD AGAPASWQYR QALVALGTAP FSGHRTIDSL LGSGATAARP
810 820 830 840 850
APAKPPAARV PGPPHGLTDA ELRVAALAAD GMANRAIAAE LQVTLRTVEL
860 870 880
HLTKAYRKLG IRGRPQLATA LDSPEHPLPM EHS
Length:883
Mass (Da):93,662
Last modified:November 1, 1996 - v1
Checksum:i56D6BFDDBB77614F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13457 Genomic DNA. Translation: BAA02711.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13457 Genomic DNA. Translation: BAA02711.1.

3D structure databases

ProteinModelPortaliQ55102.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011990. TPR-like_helical_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF48452. SSF48452. 2 hits.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ55102_STRSQ
AccessioniPrimary (citable) accession number: Q55102
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.