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Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:smr0011
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 454550S ribosomal protein L34PRO_0000187486Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ55004.
SMRiQ55004. Positions 3-45.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.Curated

Phylogenomic databases

eggNOGiCOG0230.
InParanoidiQ55004.
KOiK02914.
OrthoDBiEOG6DZF71.
PhylomeDBiQ55004.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q55004-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MTQRTLGGTN RKQKRTSGFR ARMRTHNGRK VIQARRSKGR HRLAV
Length:45
Mass (Da):5,261
Last modified:November 1, 1996 - v1
Checksum:i33443A70CE7FB994
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81989 Genomic DNA. Translation: CAA57515.1.
BA000022 Genomic DNA. Translation: BAA18241.1.
PIRiS75680.

Genome annotation databases

EnsemblBacteriaiBAA18241; BAA18241; BAA18241.
KEGGisyy:SYNGTS_1666.
syz:MYO_116820.
PATRICi23840551. VBISynSp132158_1832.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81989 Genomic DNA. Translation: CAA57515.1.
BA000022 Genomic DNA. Translation: BAA18241.1.
PIRiS75680.

3D structure databases

ProteinModelPortaliQ55004.
SMRiQ55004. Positions 3-45.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA18241; BAA18241; BAA18241.
KEGGisyy:SYNGTS_1666.
syz:MYO_116820.
PATRICi23840551. VBISynSp132158_1832.

Phylogenomic databases

eggNOGiCOG0230.
InParanoidiQ55004.
KOiK02914.
OrthoDBiEOG6DZF71.
PhylomeDBiQ55004.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning, purification and characterization of the protein subunit of ribonuclease P from the cyanobacterium Synechocystis sp. PCC 6803."
    Pascual A., Vioque A.
    Eur. J. Biochem. 241:17-24(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRL34_SYNY3
AccessioniPrimary (citable) accession number: Q55004
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: July 22, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.