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Protein

RCC1 domain-containing protein DDB_G0279253

Gene

DDB_G0279253

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
RCC1 domain-containing protein DDB_G0279253
Gene namesi
ORF Names:DDB_G0279253
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 3, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0279253.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 512512RCC1 domain-containing protein DDB_G0279253PRO_0000356176Add
BLAST

Proteomic databases

PaxDbiQ54X24.

Interactioni

Protein-protein interaction databases

STRINGi44689.DDB0235366.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati1 – 5656RCC1 1Add
BLAST
Repeati58 – 13477RCC1 2Add
BLAST
Repeati135 – 18551RCC1 3Add
BLAST
Repeati197 – 24852RCC1 4Add
BLAST
Repeati249 – 31971RCC1 5Add
BLAST
Repeati321 – 38464RCC1 6Add
BLAST
Repeati386 – 44358RCC1 7Add
BLAST
Repeati454 – 51259RCC1 8Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi78 – 10326Gln-richAdd
BLAST
Compositional biasi165 – 456292Asn-richAdd
BLAST

Sequence similaritiesi

Contains 8 RCC1 repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG1426. Eukaryota.
COG5184. LUCA.
InParanoidiQ54X24.
OMAiKEIQCGW.
PhylomeDBiQ54X24.

Family and domain databases

Gene3Di2.130.10.30. 2 hits.
InterProiIPR009091. RCC1/BLIP-II.
IPR000408. Reg_chr_condens.
[Graphical view]
PfamiPF00415. RCC1. 6 hits.
[Graphical view]
PRINTSiPR00633. RCCNDNSATION.
SUPFAMiSSF50985. SSF50985. 2 hits.
PROSITEiPS00626. RCC1_2. 2 hits.
PS50012. RCC1_3. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q54X24-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIYSWGSGN LGQLGIGNTD DSVSTPTLVL PPDGKKDYEI VNDIVGGGCH
60 70 80 90 100
SMMIIDNGDL YTFGSNDSGQ LGINSNEQQQ QQQQQQQQQQ QQQQQQQQQQ
110 120 130 140 150
QYQTIPTILN YFKINSIKIK NCSGGWAHSL ACDNNGNIYS WGSNSHGQLG
160 170 180 190 200
IDTTCSLNST LSTSNNKNNN NNNNNNNNNN NNNNNNNNNN NNNNNNSGGV
210 220 230 240 250
IKKKIVLKKK KVERKNLNEP KLIEILFNNK IRIVSVSCGM RHSIALSSEN
260 270 280 290 300
DVYGWGCNKF GQLSNLIDGN SLKSNNNNNN INDIADPMVQ DSPKLINFKN
310 320 330 340 350
EIKIIQISCG FQHTLLLDIN FKNVLSFGQN KFGQLGNGNF IDQSNPCVID
360 370 380 390 400
ISSFILPTST SKSLNDIKIK EIQCGWSNSC LLTNQDKLYI CGRGEYGILG
410 420 430 440 450
DNRDLSLDNS NSNQFKLLNS ESFNENKIKN FSIGSEHILI QVYSNDNNNN
460 470 480 490 500
NNNNNNIYSF GWNEHYQLGL CEPIIIGKDG DNKSFPQLLP SIKGNDKSLV
510
KAGGGNSFFI LP
Length:512
Mass (Da):56,826
Last modified:May 24, 2005 - v1
Checksum:i0ACC7182BF024123
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000030 Genomic DNA. Translation: EAL67775.1.
RefSeqiXP_641753.1. XM_636661.1.

Genome annotation databases

EnsemblProtistsiDDB0235366; DDB0235366; DDB_G0279253.
GeneIDi8621951.
KEGGiddi:DDB_G0279253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000030 Genomic DNA. Translation: EAL67775.1.
RefSeqiXP_641753.1. XM_636661.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0235366.

Proteomic databases

PaxDbiQ54X24.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiDDB0235366; DDB0235366; DDB_G0279253.
GeneIDi8621951.
KEGGiddi:DDB_G0279253.

Organism-specific databases

dictyBaseiDDB_G0279253.

Phylogenomic databases

eggNOGiKOG1426. Eukaryota.
COG5184. LUCA.
InParanoidiQ54X24.
OMAiKEIQCGW.
PhylomeDBiQ54X24.

Miscellaneous databases

PROiQ54X24.

Family and domain databases

Gene3Di2.130.10.30. 2 hits.
InterProiIPR009091. RCC1/BLIP-II.
IPR000408. Reg_chr_condens.
[Graphical view]
PfamiPF00415. RCC1. 6 hits.
[Graphical view]
PRINTSiPR00633. RCCNDNSATION.
SUPFAMiSSF50985. SSF50985. 2 hits.
PROSITEiPS00626. RCC1_2. 2 hits.
PS50012. RCC1_3. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of the social amoeba Dictyostelium discoideum."
    Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N.
    , Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.
    Nature 435:43-57(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AX4.

Entry informationi

Entry nameiRCCDA_DICDI
AccessioniPrimary (citable) accession number: Q54X24
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 24, 2005
Last modified: December 9, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.