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Protein

LIM domain-containing protein A

Gene

limA

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM domain-containing protein A
Gene namesi
Name:limA
ORF Names:DDB_G0283599
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 4, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0283599. limA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003281641 – 1183LIM domain-containing protein AAdd BLAST1183

Proteomic databases

PaxDbiQ54QR1.

Interactioni

Protein-protein interaction databases

STRINGi44689.DDB0191181.

Structurei

3D structure databases

ProteinModelPortaliQ54QR1.
SMRiQ54QR1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 61LIM zinc-binding 1PROSITE-ProRule annotationAdd BLAST59
Domaini982 – 1043LIM zinc-binding 2PROSITE-ProRule annotationAdd BLAST62
Domaini1052 – 1117LIM zinc-binding 3PROSITE-ProRule annotationAdd BLAST66
Domaini1118 – 1179LIM zinc-binding 4PROSITE-ProRule annotationAdd BLAST62

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi95 – 127Poly-AsnAdd BLAST33
Compositional biasi130 – 139Poly-Asn10
Compositional biasi211 – 234Poly-AsnAdd BLAST24
Compositional biasi364 – 392Poly-AsnAdd BLAST29
Compositional biasi503 – 517Poly-ThrAdd BLAST15
Compositional biasi748 – 754Poly-Gln7
Compositional biasi770 – 778Poly-His9
Compositional biasi796 – 801Poly-His6
Compositional biasi873 – 880Poly-Asn8
Compositional biasi925 – 945Poly-HisAdd BLAST21
Compositional biasi949 – 954Poly-Gln6

Keywords - Domaini

LIM domain, Repeat

Phylogenomic databases

eggNOGiKOG1044. Eukaryota.
ENOG410XRPY. LUCA.
InParanoidiQ54QR1.

Family and domain databases

InterProiView protein in InterPro
IPR001781. Znf_LIM.
PfamiView protein in Pfam
PF00412. LIM. 3 hits.
SMARTiView protein in SMART
SM00132. LIM. 4 hits.
PROSITEiView protein in PROSITE
PS00478. LIM_DOMAIN_1. 4 hits.
PS50023. LIM_DOMAIN_2. 4 hits.

Sequencei

Sequence statusi: Complete.

Q54QR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLFICRKCNT RVEGETIFVF GYHYHPNCFV CVSCNCSLSD VYFEIDKLPY
60 70 80 90 100
CELDYKKPRP GDPTNVPVLK KKPFSKPVDA SNLPRTWNNS VKPTNNNNIN
110 120 130 140 150
NNNSNNSNNN NNNNNNNNNN NNSNLNNTTN NSNNNNNNNS KPNYNPLTSF
160 170 180 190 200
GSNNLKKSTS VENNLKSSNG ISSGGGSGSG SGSGSGNPEL MYMEKNGADQ
210 220 230 240 250
QSIPVVLDST NKNNNNNNNN SNNNNNSNNN NNSNDSDNKQ TPVNVYSASI
260 270 280 290 300
ENQIIEPKHG SLINDGNNST KSKSNSNTGV PNNSTQYNAT PSPSSEVVNQ
310 320 330 340 350
FVVVESDKGQ NPTNAKRSNS FGDSLDDIIS SMEMIPKNNV STGSNVFNIQ
360 370 380 390 400
DDEKFKEIQL KKHNENNNNN NNNNNNNNNN NNNNYNYNNN NNGENNQNNS
410 420 430 440 450
NKKQPHIGGG ENLDEQVDIK INKCNEVNDS YQPSKPSVAI YSSNNNNNLK
460 470 480 490 500
PGNIAYGNNS QSSDPSEPVV IGDHRSNSPR TKSQLDLNQY QPTPNVGKST
510 520 530 540 550
QPTTTTTTTT TTSTTKTLPN KDNDNHLHGH DHQNDDNNNS SSDSSDSEDD
560 570 580 590 600
SVHDSSSSSE DESDHERKRK ARKEKKKQQK QLKHRQGHHI HNHEVGGGGA
610 620 630 640 650
AVVIDNDNEN PDDKSKSKKG GLHLDVDFTF GKKEHHHQQQ KEHDDDAEEE
660 670 680 690 700
QAKVKYVDKG VQAGSDLSIS NPSGTMIVED IHTAKLKEND HHAHPNPLEH
710 720 730 740 750
SHPHQSHSHS HSHSHPQHPH SHPQHPHSHP HQSHSHSHAH SQPTTTVQPQ
760 770 780 790 800
QQQQHSLSTV VHPHNATPSH HHHHQHSHSQ PHSFDHNQHQ HQPLQHHHHT
810 820 830 840 850
HSQPISIQHQ HIENKHIDSP IQHHVSHNIK NSHHQHQHQH PSHSDEPIVQ
860 870 880 890 900
QHVQETTKTT TTQYKPPQSS IQNNNNNNNN LIIEDSTHHS HNLHNNNGRD
910 920 930 940 950
GIKSYSKTFI TDDPNYHQNQ NQNQHHSHQH HSHQHHSHQH HHHQHQPYQQ
960 970 980 990 1000
QQQQIKVDSL PPQRPKEKVY TQTITTIVSS GKNCKRCKLE IFGNTLINHL
1010 1020 1030 1040 1050
QETYHPECFK CSNCFSSIVD PYFTEPSTNK IFCAKCQIVL NDLAKPKRDS
1060 1070 1080 1090 1100
LGFCCSCYKF LTEEDDIIVI DKEKYHNKCF KCSSCKEVIR GNNFSREQMT
1110 1120 1130 1140 1150
STSSNYCCNT CLHSGRVDKC AYCHGVILGV SMLAMGQNYH PKCFKCSTCH
1160 1170 1180
VVIRHNTPFT INKNQTPTCQ NCINTSSVGV ASR
Length:1,183
Mass (Da):132,913
Last modified:May 24, 2005 - v1
Checksum:i9EFF9BAFDB1E110F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti570K → I in AAB40929 (Ref. 2) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000056 Genomic DNA. Translation: EAL65566.1.
U83086 mRNA. Translation: AAB40929.1.
RefSeqiXP_638962.1. XM_633870.1.

Genome annotation databases

EnsemblProtistsiEAL65566; EAL65566; DDB_G0283599.
GeneIDi8624208.
KEGGiddi:DDB_G0283599.

Entry informationi

Entry nameiLIMA_DICDI
AccessioniPrimary (citable) accession number: Q54QR1
Secondary accession number(s): P90533
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 8, 2008
Last sequence update: May 24, 2005
Last modified: July 5, 2017
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase