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Protein

ABC transporter C family member 9

Gene

abcC9

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi1137 – 1144ATPPROSITE-ProRule annotation8

GO - Molecular functioni

  • ATPase activity, coupled to transmembrane movement of substances Source: dictyBase
  • ATP binding Source: UniProtKB-KW
  • transporter activity Source: dictyBase

GO - Biological processi

  • slug development involved in sorocarp development Source: dictyBase
  • sorocarp morphogenesis Source: GO_Central
  • transmembrane transport Source: GO_Central
  • transport Source: dictyBase

Keywordsi

Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-DDI-114608. Platelet degranulation.
R-DDI-2142850. Hyaluronan biosynthesis and export.
R-DDI-382556. ABC-family proteins mediated transport.
R-DDI-5689880. Ub-specific processing proteases.
R-DDI-8856825. Cargo recognition for clathrin-mediated endocytosis.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter C family member 9
Alternative name(s):
ABC transporter ABCC.9
Gene namesi
Name:abcC9
ORF Names:DDB_G0285165
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 4, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0285165. abcC9.

Subcellular locationi

  • Membrane PROSITE-ProRule annotation; Multi-pass membrane protein PROSITE-ProRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei139 – 159HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei172 – 192HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei246 – 266HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei268 – 288HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei356 – 376HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei402 – 422HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei776 – 796HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei817 – 837HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei906 – 926HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1008 – 1028HelicalPROSITE-ProRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003638541 – 1345ABC transporter C family member 9Add BLAST1345

Proteomic databases

PaxDbiQ54NL1.
PRIDEiQ54NL1.

Interactioni

Protein-protein interaction databases

STRINGi44689.DDB0216237.

Structurei

3D structure databases

ProteinModelPortaliQ54NL1.
SMRiQ54NL1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini135 – 419ABC transmembrane type-1 1PROSITE-ProRule annotationAdd BLAST285
Domaini481 – 703ABC transporter 1PROSITE-ProRule annotationAdd BLAST223
Domaini775 – 1060ABC transmembrane type-1 2PROSITE-ProRule annotationAdd BLAST286
Domaini1103 – 1338ABC transporter 2PROSITE-ProRule annotationAdd BLAST236

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili21 – 55Sequence analysisAdd BLAST35
Coiled coili709 – 739Sequence analysisAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi467 – 477Poly-AspAdd BLAST11

Sequence similaritiesi

Keywords - Domaini

Coiled coil, Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0054. Eukaryota.
COG1132. LUCA.
InParanoidiQ54NL1.
OMAiKEAPWIM.
PhylomeDBiQ54NL1.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
SMARTiView protein in SMART
SM00382. AAA. 2 hits.
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.

Sequencei

Sequence statusi: Complete.

Q54NL1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRNKIKNKK SKSDYYSEIS LEEEEDKEEE IKDKKVLSKE EIKENENKNE
60 70 80 90 100
KIKQTQCPED NASLFSKITF GWITKLIVKA YIKKSLDIKD IFDVPNYLKS
110 120 130 140 150
NYTSKFLTTE KQTFKRNTKY SLILNIYINF ILLKNKKLIL IQFLRVLFTL
160 170 180 190 200
LSPLILKLFI EFTQRIDSEK SIIEGIIYCG LLFFSSFCSS LVDEYLVWFG
210 220 230 240 250
MITSSQVKSC LTCLIFEKSL KLSNSAKVKY NAAKITNLIS IDVDNFSNFF
260 270 280 290 300
WSNSVEIFFQ PFQLIFLLIL LISEVGWSGF VGTAVILISF PINSYFGKKT
310 320 330 340 350
SDYYEKLLKY TDKRVSTTSE FINGIRFIKM YAWESLFLKK IEKQRKQELK
360 370 380 390 400
ILLERGLFWL GQIIIINTNS TFVFVATMVT YSLSGNKMKL ETAFTAMNIL
410 420 430 440 450
DSIRILLIVM PYCYYSIMEL IPSNKRIEKF LSTLEIQQNL QTTKNSNTIS
460 470 480 490 500
INNGTFKWKD ENFEETDDDD DHDDDDDEGE KEIEGKEEKE EINNFIFENI
510 520 530 540 550
NFKAPIGKLT MICSPVGSGK TSLINALIGE IEKVNGEING VPENISFTSQ
560 570 580 590 600
QPFLLSTSLR ENILFGKELD IEYYKQVLDA CCLVSDLTQL SALDLTEIGE
610 620 630 640 650
GGINLSGGQK QRVSLARALY SNSDFILMDE PLSAVDPEVA NHLFEKCIQG
660 670 680 690 700
MMKNKTRILV THQIQFIPYA DHIVIIKDGK IIQGTYKELK DENGIDFESI
710 720 730 740 750
IKTKNSNLNL NKTIKDEEEK EDKEGEEKEE DKKEMILKLI KINYSDELKE
760 770 780 790 800
KAKLLVEEDR NEGEVSFKTY KEYFYYGSSN LFLFITLLVF LIGLIVNRLS
810 820 830 840 850
DFWLTIWTEQ SFKEKSQTFY IICFVSIFIV SLILIFIRYS LVAKIGFKSS
860 870 880 890 900
KKLHDLLINS ISKSPIQFFD SNPSGRILNR FSNDISDIDT SMIDMFSDTL
910 920 930 940 950
EYIFAIVVGI FSIIYINPMT IVPFLILSMF YYQIFNIYRV SVRELNRCKS
960 970 980 990 1000
ISQSPIISFL SECCNGLSTI RAFKQQSRFI GIMNDNIDKN LKCEFASFAV
1010 1020 1030 1040 1050
EMWISIRLEL LSSIIVFIVS LFSLFNGYSN SALSILSVST ARSITSYLKS
1060 1070 1080 1090 1100
ACRQMVDLER KMNSFERVNN YIKLPSEGSG SGVKSMEFIS EKDLLNWPEK
1110 1120 1130 1140 1150
GNIQFNNVQV NYNSNSVPSL KDITFSVESN EKIGIVGRTG AGKSTIANCL
1160 1170 1180 1190 1200
FRLVECSKGS ILIDGIDIKT IDLNKLRGSL GIVPQEPWLF SGTIRSNIDP
1210 1220 1230 1240 1250
LNQYDDEMIW NYLEMVKLKK LIIEMPLKLN SKIHENGNTT LSYGQKQLLC
1260 1270 1280 1290 1300
LCRCLIKNPK LIIMDEATSS VDFQTAETIK SVINENLVNN TILTIAHRLD
1310 1320 1330 1340
IIIDSDKIAV IDNSKLIEFE NPKNLINSNS KFRKIVNFQT KIQTN
Length:1,345
Mass (Da):154,402
Last modified:May 24, 2005 - v1
Checksum:i54E539F9382C372E
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti273S → P in AAL85712 (PubMed:12456012).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF474341 Genomic DNA. Translation: AAL85712.1.
AAFI02000075 Genomic DNA. Translation: EAL64839.1.
RefSeqiXP_638351.1. XM_633259.1.

Genome annotation databases

EnsemblProtistsiEAL64839; EAL64839; DDB_G0285165.
GeneIDi8624976.
KEGGiddi:DDB_G0285165.

Similar proteinsi

Entry informationi

Entry nameiABCC9_DICDI
AccessioniPrimary (citable) accession number: Q54NL1
Secondary accession number(s): Q8T6H0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 24, 2005
Last modified: August 30, 2017
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. SIMILARITY comments
    Index of protein domains and families