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Protein

Probable phosphoglycerate mutase

Gene

gpmA

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.By similarity

Catalytic activityi

2-phospho-D-glycerate = 3-phospho-D-glycerate.By similarity
3-phospho-D-glyceroyl phosphate = 2,3-bisphospho-D-glycerate.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei10Tele-phosphohistidine intermediateBy similarity1
Binding sitei61SubstrateBy similarity1
Active sitei88Proton donor/acceptorBy similarity1
Binding sitei99SubstrateBy similarity1
Sitei183Transition state stabilizerBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Isomerase

Keywords - Biological processi

Glycolysis

Enzyme and pathway databases

BRENDAi3.1.3.80. 1939.
ReactomeiR-DDI-6798695. Neutrophil degranulation.
R-DDI-70171. Glycolysis.
R-DDI-70263. Gluconeogenesis.
R-DDI-70326. Glucose metabolism.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable phosphoglycerate mutase (EC:5.4.2.11By similarity, EC:5.4.2.4By similarity)
Alternative name(s):
BPG-dependent PGAM
Short name:
dPGM
Gene namesi
Name:gpmA
Synonyms:pgam
ORF Names:DDB_G0285311
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 4, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0285311. gpmA.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: dictyBase
  • phagocytic vesicle Source: dictyBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003280741 – 249Probable phosphoglycerate mutaseAdd BLAST249

Proteomic databases

PaxDbiQ54NE6.
PRIDEiQ54NE6.

Interactioni

Subunit structurei

Homodimer.By similarity

Protein-protein interaction databases

STRINGi44689.DDB0231354.

Structurei

3D structure databases

ProteinModelPortaliQ54NE6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni9 – 16Substrate bindingBy similarity8
Regioni22 – 23Substrate bindingBy similarity2
Regioni88 – 91Substrate bindingBy similarity4
Regioni115 – 116Substrate bindingBy similarity2
Regioni184 – 185Substrate bindingBy similarity2

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0235. Eukaryota.
COG0588. LUCA.
InParanoidiQ54NE6.
KOiK01834.
OMAiVKNQGKK.
PhylomeDBiQ54NE6.

Family and domain databases

CDDicd07067. HP_PGM_like. 1 hit.
Gene3Di3.40.50.1240. 1 hit.
HAMAPiMF_01039. PGAM_GpmA. 1 hit.
InterProiIPR013078. His_Pase_superF_clade-1.
IPR029033. His_PPase_superfam.
IPR001345. PG/BPGM_mutase_AS.
IPR005952. Phosphogly_mut1.
[Graphical view]
PANTHERiPTHR11931. PTHR11931. 1 hit.
PfamiPF00300. His_Phos_1. 1 hit.
[Graphical view]
SMARTiSM00855. PGAM. 1 hit.
[Graphical view]
SUPFAMiSSF53254. SSF53254. 1 hit.
TIGRFAMsiTIGR01258. pgm_1. 1 hit.
PROSITEiPS00175. PG_MUTASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q54NE6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVYKLVLIRH GESTWNKENK FTGWTDVDLS EKGVQEAHEA GKRLLKAGFT
60 70 80 90 100
FDIAYTSVLK RAIRTLWILL EELNLYWIPV SRQWRLNERM YGSLQGLNKS
110 120 130 140 150
ETAAKYGEDQ VLIWRRSYDI PPPALEESDE RYPGNDPRYA KLDKSDLPKT
160 170 180 190 200
ECLKDTVERF LPLWNDTIAP TIKSGQKVLI AAHGNSIRAL VKYLDNIADD
210 220 230 240
KIVSMDIPTG IPLVYELDEN LKPIKHYYLA DESELNAAIQ AVANQGKAK
Length:249
Mass (Da):28,480
Last modified:May 24, 2005 - v1
Checksum:iA1C3FA1FA891F37E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000078 Genomic DNA. Translation: EAL64785.1.
RefSeqiXP_638289.1. XM_633197.1.

Genome annotation databases

EnsemblProtistsiEAL64785; EAL64785; DDB_G0285311.
GeneIDi8625042.
KEGGiddi:DDB_G0285311.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000078 Genomic DNA. Translation: EAL64785.1.
RefSeqiXP_638289.1. XM_633197.1.

3D structure databases

ProteinModelPortaliQ54NE6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0231354.

Proteomic databases

PaxDbiQ54NE6.
PRIDEiQ54NE6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAL64785; EAL64785; DDB_G0285311.
GeneIDi8625042.
KEGGiddi:DDB_G0285311.

Organism-specific databases

dictyBaseiDDB_G0285311. gpmA.

Phylogenomic databases

eggNOGiKOG0235. Eukaryota.
COG0588. LUCA.
InParanoidiQ54NE6.
KOiK01834.
OMAiVKNQGKK.
PhylomeDBiQ54NE6.

Enzyme and pathway databases

BRENDAi3.1.3.80. 1939.
ReactomeiR-DDI-6798695. Neutrophil degranulation.
R-DDI-70171. Glycolysis.
R-DDI-70263. Gluconeogenesis.
R-DDI-70326. Glucose metabolism.

Miscellaneous databases

PROiQ54NE6.

Family and domain databases

CDDicd07067. HP_PGM_like. 1 hit.
Gene3Di3.40.50.1240. 1 hit.
HAMAPiMF_01039. PGAM_GpmA. 1 hit.
InterProiIPR013078. His_Pase_superF_clade-1.
IPR029033. His_PPase_superfam.
IPR001345. PG/BPGM_mutase_AS.
IPR005952. Phosphogly_mut1.
[Graphical view]
PANTHERiPTHR11931. PTHR11931. 1 hit.
PfamiPF00300. His_Phos_1. 1 hit.
[Graphical view]
SMARTiSM00855. PGAM. 1 hit.
[Graphical view]
SUPFAMiSSF53254. SSF53254. 1 hit.
TIGRFAMsiTIGR01258. pgm_1. 1 hit.
PROSITEiPS00175. PG_MUTASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPGAM_DICDI
AccessioniPrimary (citable) accession number: Q54NE6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 8, 2008
Last sequence update: May 24, 2005
Last modified: November 30, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.