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Reviewed, UniProtKB/Swiss-Prot Q54HM0 (ABCGG_DICDI)

Last modified December 15, 2009. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    ABC transporter G family member 16
Alternative name(s):
    ABC transporter ABCG.16
Gene names
Name: abcG16
ORF Names: DDB_G0289331
OrganismDictyostelium discoideum (Slime mold) [Complete proteome]
Taxonomic identifier44689 [NCBI]
Taxonomic lineageEukaryota › Amoebozoa › Mycetozoa › Dictyosteliida › Dictyostelium

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Protein attributes

Sequence length1528 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. [View classification]

Contains 2 ABC transmembrane type-2 domains.

Contains 2 ABC transporter domains.

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Ontologies

Keywords
   Biological processTransport
   Cellular componentMembrane
   DomainRepeat
Transmembrane
   LigandATP-binding
Nucleotide-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtransport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

ATPase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 15281528ABC transporter G family member 16
PRO_0000330365

Regions

Transmembrane514 – 53421 Potential
Transmembrane545 – 56521 Potential
Transmembrane598 – 61821 Potential
Transmembrane625 – 64521 Potential
Transmembrane655 – 67521 Potential
Transmembrane763 – 78321 Potential
Transmembrane1225 – 124521 Potential
Transmembrane1255 – 127218 Potential
Transmembrane1285 – 130521 Potential
Transmembrane1334 – 135421 Potential
Transmembrane1361 – 138121 Potential
Transmembrane1391 – 141121 Potential
Transmembrane1504 – 152421 Potential
Domain167 – 412246ABC transporter 1
Domain509 – 738230ABC transmembrane type-2 1
Domain837 – 1085249ABC transporter 2
Domain1249 – 1479231ABC transmembrane type-2 2
Nucleotide binding205 – 2128ATP 1 Potential
Nucleotide binding878 – 8858ATP 2 Potential
Compositional bias27 – 315Poly-Gln
Compositional bias86 – 894Poly-Val
Compositional bias483 – 4864Poly-Gln
Compositional bias1126 – 120176Asn-rich

Experimental info

Sequence conflict3781L → I in AAL91501. Ref.1

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Sequences

Sequence LengthMass (Da)Tools
Q54HM0-1 [UniParc].

Last modified May 24, 2005. Version 1.
Checksum: A9FB1710B0281B33

FASTA1,528172,667
        10         20         30         40         50         60 
MKLTNSISPT NLDGEINKNS QPSNDNQQQQ QPKINKIINK FSESINSVSK TIGKGIGDLT 

        70         80         90        100        110        120 
SSNALDEHIK NHNSNFIDPF YNEEAVVVVD DENIRSLIGD NCSSIGNIGV NGIEAFYGEH 

       130        140        150        160        170        180 
NNKKSELIKQ FLKINSTNNK SNQTIVVDHM DYSVMERQSS SSSSSSSRST GVSKLIPFLK 

       190        200        210        220        230        240 
RKEKIEILKD LSFYLKPGMM VLLLSEAGSG VSTLFKCLTN RIPKRGSING DILFDNEPID 

       250        260        270        280        290        300 
GESHHSQYLF VQQSDHHIST LTVKETLEFS IECQSNLSRE AKKQLSSNIL SILGISHVAD 

       310        320        330        340        350        360 
TYIGNQSIRG ISGGQKKRMT VAVELVKGAK AIMIDQATNG LDSTSAFELL NSIQMISKVS 

       370        380        390        400        410        420 
NVPALVSLLQ PSPEIFSLFS HILMMKDGEI TFFGEKHQIF DHFSDYGLEC KDKQNPAEFL 

       430        440        450        460        470        480 
SSIYHQAQLD PDCQLKSSSD FIVAYKQSQY YKDCLIKISQ ERLSNHKFSG DKSIKIIENE 

       490        500        510        520        530        540 
KEQQQQEIYQ LSLIKQIQLN LKRAFLTTIR DRASILSRVI KSSLLGLLIG TLFFQLDSSQ 

       550        560        570        580        590        600 
KSANLLPSLS FFLLTFVVFG SLAGVGQVFS ERPVFYDQKI GKYYKSIAYF FAGLVSDLIW 

       610        620        630        640        650        660 
NFIDVIIFCS ISYWLIGLNH SADRFFFFLL AIYLLDCLVN RVSKMVSIYS PNAAIASTIA 

       670        680        690        700        710        720 
PLYFSLFLLM AGYLIHRNSI PIYWRWMHYI SPFKWVFEAI LSNQLHGQTF TCKSDELLPP 

       730        740        750        760        770        780 
IGYPLLNVSF PDGYSGSQVC PIIDGIEILK SKDINSDYSY KYYSVWIILS MYLLFSILSI 

       790        800        810        820        830        840 
IGLSNITFDN IISNKEKNNG NGNNNYNGKE SINEESIKLS IKQHQQKQFE SNEKCYLTFK 

       850        860        870        880        890        900 
NLTYKVLIKK KNHQKVSRTL LHDINGYVKP GSMVALIGSS GAGKSTLLDI LANRKDQGII 

       910        920        930        940        950        960 
SGEILLNGKA RDKCFNRYVA YVEQEDTLPD FQTVREAITF SALLRLPNDT MTHQDKLDTV 

       970        980        990       1000       1010       1020 
DYILDVLELN SIANTLIGKV DHGITQEQRK RVNIAIEMAS LPDILFLDEP TTGLTSVAAE 

      1030       1040       1050       1060       1070       1080 
LIMQLIKRVA LDGRSVICTI HQPSETIFKK FDSILLLTQG GFVAYFGELG PNCRTVLNYC 

      1090       1100       1110       1120       1130       1140 
SDLGFNCPQG KNPADFLLDF SASFNSASRL ASNDKMIPSI RSRIKNVGNY CFDGSSNLNN 

      1150       1160       1170       1180       1190       1200 
KNEIKQQQTT TQNVNLGNED KQQQQQEEAN DDNNIQEATS SNSNNNNNND IIDNYQFSNL 

      1210       1220       1230       1240       1250       1260 
NRDTIEIIDS GLPIGFISKT FKEKNATSFL FQFFMLLFRF FVCAIRRRNL IMTRIIRSIL 

      1270       1280       1290       1300       1310       1320 
LSVVTGTLYL QLKNDQDGVM DRISFIFFTS TFASISCLSN IPTVFEDRFL FYHELNSNTY 

      1330       1340       1350       1360       1370       1380 
RHLSYILAMI LADLPFTIMY SLLFSAPIYW IVGLQNDVDK FLFFIFVYYL YLQVLVSFSQ 

      1390       1400       1410       1420       1430       1440 
LLGMVSPTLA TANEITGISF SVFSLFAGFI IKKDDIPSYY KWLNYVSITR YLVEPLTVNE 

      1450       1460       1470       1480       1490       1500 
MTGSVSFHCE PHQLIPVPIH YTPTNATASE PTKLVFKSFC PITQGNQVLY QFDINDTDKF 

      1510       1520 
EDTFVLIGLF IGFLLLILIF SKILKFKK

« Hide

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References

« Hide 'large scale' references
[1]"Evolutionary analyses of ABC transporters of Dictyostelium discoideum."
Anjard C., Loomis W.F.
Eukaryot. Cell 1:643-652(2002) [PubMed: 12456012] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], NOMENCLATURE.
Strain: AX4.
[2]"The genome of the social amoeba Dictyostelium discoideum."
Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N. expand/collapse author list , Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.
Nature 435:43-57(2005) [PubMed: 15875012] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AX4.
+Additional computationally mapped references.

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Cross-references

Sequence databases

AF482394 Genomic DNA. Translation: AAL91501.1.
AAFI02000139 Genomic DNA. Translation: EAL62752.1.
RefSeqXP_636281.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3387838.
GenomeReviewsGene locus abcG16 in contig CM000154_GR.
KEGGddi:DDB_0191236.

Organism-specific databases

dictyBaseDDB_G0289331. abcG16.

Phylogenomic databases

OMARESHITR.

Family and domain databases

InterProIPR013525. ABC_2_trans.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR003593. ATPase_AAA+_core.
[Graphical view]
PfamPF01061. ABC2_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTSM00382. AAA. 2 hits.
[Graphical view]
PROSITEPS51012. ABC_TM2. False negative.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameABCGG_DICDI
AccessionPrimary (citable) accession number: Q54HM0
Secondary accession number(s): Q8T677
Entry history
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: May 24, 2005
Last modified: December 15, 2009
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)

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Relevant documents

Dictyostelium discoideum

Dictyostelium discoideum: entries, gene names and cross-references to dictyBase

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents