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Q54AD6

- Q54AD6_9CALI

UniProt

Q54AD6 - Q54AD6_9CALI

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Protein
Submitted name:

VP1 protein

Gene
N/A
Organism
Norwalk-like virus
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei375 – 3751FucoseImported
Binding sitei438 – 4381Fucose; via amide nitrogenImported

Names & Taxonomyi

Protein namesi
Submitted name:
VP1 proteinImported
OrganismiNorwalk-like virusImported
Taxonomic identifieri95340 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6JX-ray1.75A225-525[»]
3R6KX-ray1.60A225-525[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni345 – 3462Fucose bindingImported

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q54AD6 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKMASSDAAP SNDGAAGLVP EANNETMALE PVAGASIAAP LTGQNNIIDP
60 70 80 90 100
WIRLNFVQAP NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA
110 120 130 140 150
GGVEVQVLLA GNAFTAGKLV FAAVPPHFPL ENISPGQITM FPHVIIDVRT
160 170 180 190 200
LEPVLLPLPD VRNNFFHYNQ QNEPRMRLVA MLYTPLRSNG SGDDVFTVSC
210 220 230 240 250
RVLTRPSPDF DFNYLVPPTV ESKTKPFTLP ILTIGELTNS RFPVPIDELY
260 270 280 290 300
TSPNESLVVQ PQNGRCALDG ELQGTTQLLP TAICSFRGRI NQKVSGENHV
310 320 330 340 350
WNMQVTNING TPFDPTEDVP APLGTPDFSG KLFGVLSQRD HDNACRSHDA
360 370 380 390 400
VIATNSAKFT PKLGAIQIGT WEEDDVHINQ PTKFTPVGLF EDGGFNQWTL
410 420 430 440 450
PNYSGALTLN MGLAPPVAPT FPGEQILFFR SHIPLKGGVA DPVIDCLLPQ
460 470 480 490 500
EWIQHLYQES APSQSDVALI RFTNPDTGRV LFEAKLHRSG YITVANTGSR
510 520 530
PIVVPANGYF RFDSWVNQFY SLAPMGTGNG RRRVQ
Length:535
Mass (Da):58,450
Last modified:May 24, 2005 - v1
Checksum:i02B77FFB68B7B158
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB044366 Genomic RNA. Translation: BAD20208.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB044366 Genomic RNA. Translation: BAD20208.1 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3R6J X-ray 1.75 A 225-525 [» ]
3R6K X-ray 1.60 A 225-525 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Abe K., Noda M., Ikeda Y., Kamimura M., Fujii A., Yamaoka K., Ogino T.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Hu/Norovirus/hiroshima/1999/JPImported.
  2. "Detection of norovirus and sapovirus infection among children with gastroenteritis in Ho Chi Minh City, Vietnam."
    Hansman G.S., Doan L.T.P., Kguyen T.A., Okitsu S., Katayama K., Ogawa S., Natori K., Takeda N., Kato Y., Nishio O., Noda M., Ushijima H.
    Arch. Virol. 0:0-0(2004)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Hu/Norovirus/hiroshima/1999/JPImported.
  3. "Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability."
    Hansman G.S., Biertumpfel C., Georgiev I., McLellan J.S., Chen L., Zhou T., Katayama K., Kwong P.D.
    J. Virol. 85:6687-6701(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 225-525 IN COMPLEX WITH FUCOSE.

Entry informationi

Entry nameiQ54AD6_9CALI
AccessioniPrimary (citable) accession number: Q54AD6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: October 29, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3