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Q54AD6

- Q54AD6_9CALI

UniProt

Q54AD6 - Q54AD6_9CALI

Protein
Submitted name:

VP1 protein

Gene
N/A
Organism
Norwalk-like virus
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (24 May 2005)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei375 – 3751FucoseImported
    Binding sitei438 – 4381Fucose; via amide nitrogenImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    VP1 proteinImported
    OrganismiNorwalk-like virusImported
    Taxonomic identifieri95340 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3R6JX-ray1.75A225-525[»]
    3R6KX-ray1.60A225-525[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni345 – 3462Fucose bindingImported

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR004005. Calicivirus_coat.
    IPR013643. Calicivirus_coat_C.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00915. Calici_coat. 1 hit.
    PF08435. Calici_coat_C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q54AD6-1 [UniParc]FASTAAdd to Basket

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    MKMASSDAAP SNDGAAGLVP EANNETMALE PVAGASIAAP LTGQNNIIDP    50
    WIRLNFVQAP NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA 100
    GGVEVQVLLA GNAFTAGKLV FAAVPPHFPL ENISPGQITM FPHVIIDVRT 150
    LEPVLLPLPD VRNNFFHYNQ QNEPRMRLVA MLYTPLRSNG SGDDVFTVSC 200
    RVLTRPSPDF DFNYLVPPTV ESKTKPFTLP ILTIGELTNS RFPVPIDELY 250
    TSPNESLVVQ PQNGRCALDG ELQGTTQLLP TAICSFRGRI NQKVSGENHV 300
    WNMQVTNING TPFDPTEDVP APLGTPDFSG KLFGVLSQRD HDNACRSHDA 350
    VIATNSAKFT PKLGAIQIGT WEEDDVHINQ PTKFTPVGLF EDGGFNQWTL 400
    PNYSGALTLN MGLAPPVAPT FPGEQILFFR SHIPLKGGVA DPVIDCLLPQ 450
    EWIQHLYQES APSQSDVALI RFTNPDTGRV LFEAKLHRSG YITVANTGSR 500
    PIVVPANGYF RFDSWVNQFY SLAPMGTGNG RRRVQ 535
    Length:535
    Mass (Da):58,450
    Last modified:May 24, 2005 - v1
    Checksum:i02B77FFB68B7B158
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB044366 Genomic RNA. Translation: BAD20208.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB044366 Genomic RNA. Translation: BAD20208.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3R6J X-ray 1.75 A 225-525 [» ]
    3R6K X-ray 1.60 A 225-525 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR004005. Calicivirus_coat.
    IPR013643. Calicivirus_coat_C.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00915. Calici_coat. 1 hit.
    PF08435. Calici_coat_C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Abe K., Noda M., Ikeda Y., Kamimura M., Fujii A., Yamaoka K., Ogino T.
      Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Hu/Norovirus/hiroshima/1999/JPImported.
    2. "Detection of norovirus and sapovirus infection among children with gastroenteritis in Ho Chi Minh City, Vietnam."
      Hansman G.S., Doan L.T.P., Kguyen T.A., Okitsu S., Katayama K., Ogawa S., Natori K., Takeda N., Kato Y., Nishio O., Noda M., Ushijima H.
      Arch. Virol. 0:0-0(2004)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Hu/Norovirus/hiroshima/1999/JPImported.
    3. "Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability."
      Hansman G.S., Biertumpfel C., Georgiev I., McLellan J.S., Chen L., Zhou T., Katayama K., Kwong P.D.
      J. Virol. 85:6687-6701(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 225-525 IN COMPLEX WITH FUCOSE.

    Entry informationi

    Entry nameiQ54AD6_9CALI
    AccessioniPrimary (citable) accession number: Q54AD6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 24, 2005
    Last sequence update: May 24, 2005
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported

    External Data

    Dasty 3