Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q54AD6 (Q54AD6_9CALI) Unreviewed, UniProtKB/TrEMBL

Last modified March 21, 2012. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
OrganismNorwalk-like virus EMBL BAD20208.1
Taxonomic identifier95340 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus

Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 3R6K PDB 3R6J
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region345 – 3462Fucose binding PDB 3R6K

Sites

Binding site3751Fucose PDB 3R6K
Binding site4381Fucose; via amide nitrogen PDB 3R6K

Sequences

Sequence LengthMass (Da)Tools
Q54AD6 [UniParc].

Last modified May 24, 2005. Version 1.
Checksum: 02B77FFB68B7B158

FASTA53558,450
        10         20         30         40         50         60 
MKMASSDAAP SNDGAAGLVP EANNETMALE PVAGASIAAP LTGQNNIIDP WIRLNFVQAP 

        70         80         90        100        110        120 
NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA GGVEVQVLLA GNAFTAGKLV 

       130        140        150        160        170        180 
FAAVPPHFPL ENISPGQITM FPHVIIDVRT LEPVLLPLPD VRNNFFHYNQ QNEPRMRLVA 

       190        200        210        220        230        240 
MLYTPLRSNG SGDDVFTVSC RVLTRPSPDF DFNYLVPPTV ESKTKPFTLP ILTIGELTNS 

       250        260        270        280        290        300 
RFPVPIDELY TSPNESLVVQ PQNGRCALDG ELQGTTQLLP TAICSFRGRI NQKVSGENHV 

       310        320        330        340        350        360 
WNMQVTNING TPFDPTEDVP APLGTPDFSG KLFGVLSQRD HDNACRSHDA VIATNSAKFT 

       370        380        390        400        410        420 
PKLGAIQIGT WEEDDVHINQ PTKFTPVGLF EDGGFNQWTL PNYSGALTLN MGLAPPVAPT 

       430        440        450        460        470        480 
FPGEQILFFR SHIPLKGGVA DPVIDCLLPQ EWIQHLYQES APSQSDVALI RFTNPDTGRV 

       490        500        510        520        530 
LFEAKLHRSG YITVANTGSR PIVVPANGYF RFDSWVNQFY SLAPMGTGNG RRRVQ 

« Hide

References

[1]Abe K., Noda M., Ikeda Y., Kamimura M., Fujii A., Yamaoka K., Ogino T.
Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Hu/Norovirus/hiroshima/1999/JP EMBL BAD20208.1.
[2]"Detection of norovirus and sapovirus infection among children with gastroenteritis in Ho Chi Minh City, Vietnam."
Hansman G.S., Doan L.T.P., Kguyen T.A., Okitsu S., Katayama K., Ogawa S., Natori K., Takeda N., Kato Y., Nishio O., Noda M., Ushijima H.
Arch. Virol. 0:0-0(2004)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Hu/Norovirus/hiroshima/1999/JP EMBL BAD20208.1.
[3]"Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability."
Hansman G.S., Biertumpfel C., Georgiev I., McLellan J.S., Chen L., Zhou T., Katayama K., Kwong P.D.
J. Virol. 85:6687-6701(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 225-525 IN COMPLEX WITH FUCOSE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB044366 Genomic RNA. Translation: BAD20208.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6JX-ray1.75A225-525[»]
3R6KX-ray1.60A225-525[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
[Graphical view]
PfamPF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ54AD6_9CALI
AccessionPrimary (citable) accession number: Q54AD6
Entry history
Integrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: March 21, 2012
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)