Q54AD6 (Q54AD6_9CALI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: VP1 protein EMBL BAD20208.1
Organism	Norwalk-like virus EMBL BAD20208.1
Taxonomic identifier	95340 [NCBI]
Taxonomic lineage	Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Caliciviridae › Norovirus › Norwalk virus

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3R6K PDB 3R6J
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Region	345 – 346	2	Fucose binding PDB 3R6K
Sites
	Binding site	375	1	Fucose PDB 3R6K
	Binding site	438	1	Fucose; via amide nitrogen PDB 3R6K

Sequences

	Sequence		Length	Mass (Da)
	Q54AD6 [UniParc]. Last modified May 24, 2005. Version 1. Checksum: 02B77FFB68B7B158	FASTA	535	58,450
	10 20 30 40 50 60 MKMASSDAAP SNDGAAGLVP EANNETMALE PVAGASIAAP LTGQNNIIDP WIRLNFVQAP 70 80 90 100 110 120 NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA GGVEVQVLLA GNAFTAGKLV 130 140 150 160 170 180 FAAVPPHFPL ENISPGQITM FPHVIIDVRT LEPVLLPLPD VRNNFFHYNQ QNEPRMRLVA 190 200 210 220 230 240 MLYTPLRSNG SGDDVFTVSC RVLTRPSPDF DFNYLVPPTV ESKTKPFTLP ILTIGELTNS 250 260 270 280 290 300 RFPVPIDELY TSPNESLVVQ PQNGRCALDG ELQGTTQLLP TAICSFRGRI NQKVSGENHV 310 320 330 340 350 360 WNMQVTNING TPFDPTEDVP APLGTPDFSG KLFGVLSQRD HDNACRSHDA VIATNSAKFT 370 380 390 400 410 420 PKLGAIQIGT WEEDDVHINQ PTKFTPVGLF EDGGFNQWTL PNYSGALTLN MGLAPPVAPT 430 440 450 460 470 480 FPGEQILFFR SHIPLKGGVA DPVIDCLLPQ EWIQHLYQES APSQSDVALI RFTNPDTGRV 490 500 510 520 530 LFEAKLHRSG YITVANTGSR PIVVPANGYF RFDSWVNQFY SLAPMGTGNG RRRVQ

References

[1]	Abe K., Noda M., Ikeda Y., Kamimura M., Fujii A., Yamaoka K., Ogino T. Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Hu/Norovirus/hiroshima/1999/JP EMBL BAD20208.1.
[2]	"Detection of norovirus and sapovirus infection among children with gastroenteritis in Ho Chi Minh City, Vietnam." Hansman G.S., Doan L.T.P., Kguyen T.A., Okitsu S., Katayama K., Ogawa S., Natori K., Takeda N., Kato Y., Nishio O., Noda M., Ushijima H. Arch. Virol. 0:0-0(2004) Cited for: NUCLEOTIDE SEQUENCE. Strain: Hu/Norovirus/hiroshima/1999/JP EMBL BAD20208.1.
[3]	"Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability." Hansman G.S., Biertumpfel C., Georgiev I., McLellan J.S., Chen L., Zhou T., Katayama K., Kwong P.D. J. Virol. 85:6687-6701(2011) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 225-525 IN COMPLEX WITH FUCOSE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB044366 Genomic RNA. Translation: BAD20208.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3R6J	X-ray	1.75	A	225-525	[»]
3R6K	X-ray	1.60	A	225-525	[»]

ModBase

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Protocols and materials databases

StructuralBiologyKnowledgebase

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Family and domain databases

InterPro

IPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
[Graphical view]

Pfam

PF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view]

ProtoNet

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Entry information

Entry name

Q54AD6_9CALI

Accession

Primary (citable) accession number: Q54AD6

Entry history

Integrated into UniProtKB/TrEMBL:	May 24, 2005
Last sequence update:	May 24, 2005
Last modified:	March 21, 2012
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)