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Protein
Submitted name:

TraR

Gene

traR

Organism
Streptomyces phaeochromogenes
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi35 – 54H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
TraRImported
Gene namesi
Name:traRImported
Encoded oniPlasmid pJV1Imported
OrganismiStreptomyces phaeochromogenesImported
Taxonomic identifieri1923 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1V4RNMR-A7-99[»]
ProteinModelPortaliQ54677.
SMRiQ54677.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ54677.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 75HTH gntR-type DNA-bindingInterPro annotationAdd BLAST69

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiView protein in InterPro
IPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
SMARTiView protein in SMART
SM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q54677-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYRAQGAGY ADVAEHYRSR IKAGELAPGD ALPSVTDIRQ QFDVAAKTVS
60 70 80 90 100
RALAVLKRVG LVTSRGALGT VVAKSPIVIT GADRLDRMAK NGKRYAPGET
110 120 130 140 150
SSGHRVMQRS VYDPEVCAAL DLEPGDEAVI RIRVFRQDDK PSSVGVSVYP
160 170 180 190 200
PHTVAAVPEL GQDERMVAQF DQLYTERTGR EVVKGQRTAH ARQASQDELA
210 220 230 240
ALEIDAPPHS AVAVMVTTVT FHDDERALGY WEDVYAPGAR VPMGE
Length:245
Mass (Da):26,526
Last modified:November 1, 1996 - v1
Checksum:i4E27BC0557F0AD55
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U23762 Genomic DNA. Translation: AAA91011.1.
RefSeqiNP_044355.1. NC_001759.1.
WP_010890171.1. NC_001759.1.

Genome annotation databases

GeneIDi874946.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U23762 Genomic DNA. Translation: AAA91011.1.
RefSeqiNP_044355.1. NC_001759.1.
WP_010890171.1. NC_001759.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1V4RNMR-A7-99[»]
ProteinModelPortaliQ54677.
SMRiQ54677.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi874946.

Miscellaneous databases

EvolutionaryTraceiQ54677.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiView protein in InterPro
IPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
SMARTiView protein in SMART
SM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ54677_STRPH
AccessioniPrimary (citable) accession number: Q54677
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.