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Protein
Submitted name:

TraR

Gene

traR

Organism
Streptomyces phaeochromogenes
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
TraRImported
Gene namesi
Name:traRImported
Encoded oniPlasmid pJV1Imported
OrganismiStreptomyces phaeochromogenesImported
Taxonomic identifieri1923 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V4RNMR-A7-99[»]
ProteinModelPortaliQ54677.
SMRiQ54677. Positions 1-99.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ54677.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 7569HTH gntR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

KOiK03710.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q54677-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYRAQGAGY ADVAEHYRSR IKAGELAPGD ALPSVTDIRQ QFDVAAKTVS
60 70 80 90 100
RALAVLKRVG LVTSRGALGT VVAKSPIVIT GADRLDRMAK NGKRYAPGET
110 120 130 140 150
SSGHRVMQRS VYDPEVCAAL DLEPGDEAVI RIRVFRQDDK PSSVGVSVYP
160 170 180 190 200
PHTVAAVPEL GQDERMVAQF DQLYTERTGR EVVKGQRTAH ARQASQDELA
210 220 230 240
ALEIDAPPHS AVAVMVTTVT FHDDERALGY WEDVYAPGAR VPMGE
Length:245
Mass (Da):26,526
Last modified:November 1, 1996 - v1
Checksum:i4E27BC0557F0AD55
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U23762 Genomic DNA. Translation: AAA91011.1.
RefSeqiNP_044355.1. NC_001759.1.
WP_010890171.1. NC_001759.1.

Genome annotation databases

GeneIDi874946.
KEGGipg:874946.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U23762 Genomic DNA. Translation: AAA91011.1.
RefSeqiNP_044355.1. NC_001759.1.
WP_010890171.1. NC_001759.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V4RNMR-A7-99[»]
ProteinModelPortaliQ54677.
SMRiQ54677. Positions 1-99.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi874946.
KEGGipg:874946.

Phylogenomic databases

KOiK03710.

Miscellaneous databases

EvolutionaryTraceiQ54677.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ54677_STRPH
AccessioniPrimary (citable) accession number: Q54677
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.