Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Helix-turn-helix DNA binding protein

Gene

orfG

Organism
Streptomyces hygroscopicus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi242 – 263H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi291 – 314H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Helix-turn-helix DNA binding proteinImported
Gene namesi
Name:orfGImported
OrganismiStreptomyces hygroscopicusImported
Taxonomic identifieri1912 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

ProteinModelPortaliQ54308.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini224 – 324HTH araC/xylS-type DNA-bindingInterPro annotationAdd BLAST101

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q54308-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNGAGAEAD GSRGAFSVDS TVPGAAPQGF FQAFQRGWDA ELGDGLPLRS
60 70 80 90 100
FNRDVTGDFR VRSRAAKVRD LAFTDLHSMS AIRTAHALGG VEDRVRMYVV
110 120 130 140 150
KRGAWTLAGS RDRDRHTVAA GQFLLRHVGQ PWRFEAAPHT TVKILLLPPG
160 170 180 190 200
PLTPLLGNRA VTGPADSAEV RLLVAHANMV YETMTGLGPA GVQAAHSTLL
210 220 230 240 250
ELAQSVARRR FDDVEPRLAP ALAGAAKDLA DSHLTDPELS PTMLARELNV
260 270 280 290 300
SLRTLQRAFT VAGESLIAYI RHRRLEEARR ALIASAGRLS VSELAAHWQF
310 320 330
ADSSHFIRVF KKTYGQTPTE YARSTGLTDS
Length:330
Mass (Da):35,770
Last modified:November 1, 1996 - v1
Checksum:iD78B6BED1327DF78
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X86780 Genomic DNA. Translation: CAA60472.1.
PIRiT30238.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X86780 Genomic DNA. Translation: CAA60472.1.
PIRiT30238.

3D structure databases

ProteinModelPortaliQ54308.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ54308_STRHY
AccessioniPrimary (citable) accession number: Q54308
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.