Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

LIM domain only 4, isoform CRA_a

Gene

Lmo4

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
LIM domain only 4, isoform CRA_aImported
Submitted name:
Lmo4 proteinImported
Gene namesi
Name:Lmo4Imported
ORF Names:mCG_3357Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:109360. Lmo4.

Expressioni

Gene expression databases

BgeeiENSMUSG00000028266.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000113513.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 83LIM zinc-bindingInterPro annotationAdd BLAST63
Domaini85 – 147LIM zinc-bindingInterPro annotationAdd BLAST63

Sequence similaritiesi

Contains 2 LIM zinc-binding domains.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotation

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
HOVERGENiHBG054231.
OMAiTIPANDY.
OrthoDBiEOG091G0LKW.

Family and domain databases

Gene3Di2.10.110.10. 2 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00132. LIM. 2 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q542S1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNPGSSSQP PPVTAGSLSW KRCAGCGGKI ADRFLLYAMD SYWHSRCLKC
60 70 80 90 100
SCCQAQLGDI GTSCYTKSGM ILCRNDYIRL FGNSGACSAC GQSIPASELV
110 120 130 140 150
MRAQGNVYHL KCFTCSTCRN RLVPGDRFHY INGSLFCEHD RPTALINGHL
160
NSLQSNPLLP DQKVC
Length:165
Mass (Da):17,994
Last modified:May 24, 2005 - v1
Checksum:iC8AC295144AD7787
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC100382 mRNA. Translation: AAI00383.1.
AK080534 mRNA. Translation: BAC37938.1.
AK138278 mRNA. Translation: BAE23609.1.
AK159590 mRNA. Translation: BAE35210.1.
CH466532 Genomic DNA. Translation: EDL12031.1.
CH466532 Genomic DNA. Translation: EDL12032.1.
CH466532 Genomic DNA. Translation: EDL12033.1.
RefSeqiNP_001155241.1. NM_001161769.1.
NP_001155242.1. NM_001161770.1.
NP_034853.1. NM_010723.3.
UniGeneiMm.29187.

Genome annotation databases

GeneIDi16911.
KEGGimmu:16911.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC100382 mRNA. Translation: AAI00383.1.
AK080534 mRNA. Translation: BAC37938.1.
AK138278 mRNA. Translation: BAE23609.1.
AK159590 mRNA. Translation: BAE35210.1.
CH466532 Genomic DNA. Translation: EDL12031.1.
CH466532 Genomic DNA. Translation: EDL12032.1.
CH466532 Genomic DNA. Translation: EDL12033.1.
RefSeqiNP_001155241.1. NM_001161769.1.
NP_001155242.1. NM_001161770.1.
NP_034853.1. NM_010723.3.
UniGeneiMm.29187.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000113513.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi16911.
KEGGimmu:16911.

Organism-specific databases

CTDi8543.
MGIiMGI:109360. Lmo4.

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
HOVERGENiHBG054231.
OMAiTIPANDY.
OrthoDBiEOG091G0LKW.

Miscellaneous databases

ChiTaRSiLmo4. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000028266.

Family and domain databases

Gene3Di2.10.110.10. 2 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00132. LIM. 2 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ542S1_MOUSE
AccessioniPrimary (citable) accession number: Q542S1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: November 30, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.