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Protein
Submitted name:

DNA segment, human D4S114, isoform CRA_a

Gene

Nrep

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
DNA segment, human D4S114, isoform CRA_aImported
Submitted name:
High-altitude regulated proteinImported
Submitted name:
Neuronal regeneration-related proteinImported
Gene namesi
Name:NrepImported
Synonyms:D0H4S114Imported, HarpImported
ORF Names:mCG_119971Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 18

Organism-specific databases

MGIiMGI:99444. Nrep.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000058132.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410J38C. Eukaryota.
ENOG4111AXH. LUCA.
GeneTreeiENSGT00390000016521.
HOVERGENiHBG052654.
OMAiYPELLVW.

Family and domain databases

InterProiIPR024417. Neuronal_3.1.
[Graphical view]
PANTHERiPTHR17102. PTHR17102. 1 hit.
PfamiPF11092. Alveol-reg_P311. 1 hit.
[Graphical view]
ProDomiPD019364. PD019364. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q542Q5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVYYPELLVW VSQEPFAYKE MEGGLIKGRL PVPKEVNRKK MEETGAASLT
60
PPGSREFTSP ATSYLHPF
Length:68
Mass (Da):7,688
Last modified:May 24, 2005 - v1
Checksum:iFAC111CFE0AEFEAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115117 Genomic DNA. No translation available.
EU447302 mRNA. Translation: ACC65771.1.
AK081502 mRNA. Translation: BAC38238.1.
AK133769 mRNA. Translation: BAE21830.1.
CH466557 Genomic DNA. Translation: EDK97072.1.
RefSeqiNP_001103458.1. NM_001109988.1.
NP_001103459.1. NM_001109989.2.
NP_001254646.1. NM_001267717.1.
NP_444308.1. NM_053078.4.
UniGeneiMm.407415.

Genome annotation databases

EnsembliENSMUST00000051087; ENSMUSP00000058132; ENSMUSG00000042834.
ENSMUST00000168890; ENSMUSP00000130297; ENSMUSG00000042834.
ENSMUST00000171533; ENSMUSP00000127787; ENSMUSG00000042834.
GeneIDi27528.
KEGGimmu:27528.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115117 Genomic DNA. No translation available.
EU447302 mRNA. Translation: ACC65771.1.
AK081502 mRNA. Translation: BAC38238.1.
AK133769 mRNA. Translation: BAE21830.1.
CH466557 Genomic DNA. Translation: EDK97072.1.
RefSeqiNP_001103458.1. NM_001109988.1.
NP_001103459.1. NM_001109989.2.
NP_001254646.1. NM_001267717.1.
NP_444308.1. NM_053078.4.
UniGeneiMm.407415.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000058132.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000051087; ENSMUSP00000058132; ENSMUSG00000042834.
ENSMUST00000168890; ENSMUSP00000130297; ENSMUSG00000042834.
ENSMUST00000171533; ENSMUSP00000127787; ENSMUSG00000042834.
GeneIDi27528.
KEGGimmu:27528.

Organism-specific databases

CTDi9315.
MGIiMGI:99444. Nrep.

Phylogenomic databases

eggNOGiENOG410J38C. Eukaryota.
ENOG4111AXH. LUCA.
GeneTreeiENSGT00390000016521.
HOVERGENiHBG052654.
OMAiYPELLVW.

Miscellaneous databases

NextBioi305652.
SOURCEiSearch...

Family and domain databases

InterProiIPR024417. Neuronal_3.1.
[Graphical view]
PANTHERiPTHR17102. PTHR17102. 1 hit.
PfamiPF11092. Alveol-reg_P311. 1 hit.
[Graphical view]
ProDomiPD019364. PD019364. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  9. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  10. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported and Whole bodyImported.
  11. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  12. "Hypoxia induced muscle damage."
    Willmann G., Bogdanovich S., Budak M.T., Baby S.M., Wiesen M.H.J., Lozynska O., Fu Q.M.S., Querfurth H.W., Mosqueira M., Iturriaga R., Lahiri S., Khurana T.S.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/10Imported.
  13. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  14. Ensembl
    Submitted (AUG-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ542Q5_MOUSE
AccessioniPrimary (citable) accession number: Q542Q5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: December 9, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.