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Q542P2

- Q542P2_MOUSE

UniProt

Q542P2 - Q542P2_MOUSE

Protein
Submitted name:

Glycoprotein m6a, isoform CRA_b

Gene

Gpm6a

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (24 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. calcium channel activity Source: Ensembl

    GO - Biological processi

    1. neuron migration Source: Ensembl
    2. positive regulation of filopodium assembly Source: Ensembl
    3. stem cell differentiation Source: Ensembl
    4. synapse assembly Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Glycoprotein m6a, isoform CRA_bImported
    Gene namesi
    Name:Gpm6aImported
    ORF Names:mCG_1375Imported
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:107671. Gpm6a.

    Subcellular locationi

    GO - Cellular componenti

    1. filopodium Source: Ensembl
    2. integral component of membrane Source: InterPro
    3. neuronal cell body Source: Ensembl
    4. neuron projection Source: Ensembl
    5. plasma membrane Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriQ542P2.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000006915.
    HOVERGENiHBG000096.
    InParanoidiQ542P2.
    OMAiEEKKVCT.

    Family and domain databases

    InterProiIPR001614. Myelin_PLP.
    IPR018237. Myelin_PLP_CS.
    [Graphical view]
    PANTHERiPTHR11683. PTHR11683. 1 hit.
    PfamiPF01275. Myelin_PLP. 1 hit.
    [Graphical view]
    PRINTSiPR00214. MYELINPLP.
    SMARTiSM00002. PLP. 1 hit.
    [Graphical view]
    PROSITEiPS00575. MYELIN_PLP_1. 1 hit.
    PS01004. MYELIN_PLP_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q542P2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEENMEEGQT QKGCFECCIK CLGGIPYASL IATILLYAGV ALFCGCGHEA    50
    LSGTVNILQT YFELARTAGD TLDVFTMIDI FKYVIYGIAA AFFVYGILLM 100
    VEGFFTTGAI KDLYGDFKIT TCGRCVSAWF IMLTYLFMLA WLGVTAFTSL 150
    PVYMYFNVWT ICRNTTLVEG ANLCLDLRQF GIVTIGEEKK ICTASENFLR 200
    MCESTELNMT FHLFIVALAG AGAAVIAMVH YLMVLSANWA YVKDACRMQK 250
    YEDIKSKEEQ ELHDIHSTRS KERLNAYT 278
    Length:278
    Mass (Da):31,149
    Last modified:May 24, 2005 - v1
    Checksum:iCEE0688873E786CE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK053538 mRNA. Translation: BAC35419.1.
    AK081877 mRNA. Translation: BAC38356.1.
    AK147245 mRNA. Translation: BAE27793.1.
    AK147280 mRNA. Translation: BAE27817.1.
    CH466554 Genomic DNA. Translation: EDL35650.1.
    RefSeqiNP_001240685.1. NM_001253756.1.
    NP_705809.1. NM_153581.6.
    UniGeneiMm.241700.

    Genome annotation databases

    GeneIDi234267.
    KEGGimmu:234267.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK053538 mRNA. Translation: BAC35419.1 .
    AK081877 mRNA. Translation: BAC38356.1 .
    AK147245 mRNA. Translation: BAE27793.1 .
    AK147280 mRNA. Translation: BAE27817.1 .
    CH466554 Genomic DNA. Translation: EDL35650.1 .
    RefSeqi NP_001240685.1. NM_001253756.1.
    NP_705809.1. NM_153581.6.
    UniGenei Mm.241700.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 234267.
    KEGGi mmu:234267.

    Organism-specific databases

    CTDi 2823.
    MGIi MGI:107671. Gpm6a.

    Phylogenomic databases

    GeneTreei ENSGT00390000006915.
    HOVERGENi HBG000096.
    InParanoidi Q542P2.
    OMAi EEKKVCT.

    Miscellaneous databases

    ChiTaRSi GPM6A. mouse.
    NextBioi 382077.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q542P2.

    Family and domain databases

    InterProi IPR001614. Myelin_PLP.
    IPR018237. Myelin_PLP_CS.
    [Graphical view ]
    PANTHERi PTHR11683. PTHR11683. 1 hit.
    Pfami PF01275. Myelin_PLP. 1 hit.
    [Graphical view ]
    PRINTSi PR00214. MYELINPLP.
    SMARTi SM00002. PLP. 1 hit.
    [Graphical view ]
    PROSITEi PS00575. MYELIN_PLP_1. 1 hit.
    PS01004. MYELIN_PLP_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    5. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    7. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: HeadImported.
    9. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported.
    10. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    11. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6Imported and C57BL/6JImported.
      Tissue: BrainImported, EyeballImported and HeadImported.
    12. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.

    Entry informationi

    Entry nameiQ542P2_MOUSE
    AccessioniPrimary (citable) accession number: Q542P2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 24, 2005
    Last sequence update: May 24, 2005
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)