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Protein
Submitted name:

Ceroid-lipofuscinosis, neuronal 8, isoform CRA_a

Gene

Cln8

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Ceroid-lipofuscinosis, neuronal 8, isoform CRA_aImported
Gene namesi
Name:Cln8Imported
ORF Names:mCG_14825Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1349447 Cln8

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei23 – 42HelicalSequence analysisAdd BLAST20
Transmembranei62 – 84HelicalSequence analysisAdd BLAST23
Transmembranei104 – 121HelicalSequence analysisAdd BLAST18
Transmembranei133 – 151HelicalSequence analysisAdd BLAST19
Transmembranei157 – 180HelicalSequence analysisAdd BLAST24
Transmembranei201 – 222HelicalSequence analysisAdd BLAST22
Transmembranei228 – 249HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PRIDEiQ542J5

Expressioni

Gene expression databases

BgeeiENSMUSG00000026317
ExpressionAtlasiQ542J5 baseline and differential

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini62 – 262TLCInterPro annotationAdd BLAST201

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG4561 Eukaryota
ENOG410XPW0 LUCA
HOVERGENiHBG028338
KOiK12360
OMAiFHCRMVL
OrthoDBiEOG091G0DG9

Family and domain databases

InterProiView protein in InterPro
IPR006634 TLC-dom
PfamiView protein in Pfam
PF03798 TRAM_LAG1_CLN8, 1 hit
SMARTiView protein in SMART
SM00724 TLC, 1 hit
PROSITEiView protein in PROSITE
PS50922 TLC, 1 hit

Sequencei

Sequence statusi: Complete.

Q542J5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPVSSHGLA ESIFDLDYAS WKIRSTLAVA GFVFYLGVFV VCHQLSSSLN
60 70 80 90 100
ATYRSLAAKE KVFWNLAATR AVFGVQSTTA GLWALLGDPV LYADKALGQQ
110 120 130 140 150
NWCWFHITTA TGFFFFENVA VHLSNLFFRT FDLFLVVHHL FAFLGFLGSA
160 170 180 190 200
INLRAGHYLA MTTLLLEMST PFTCISWMLL KAGWSDSLFW KANQWLMIHM
210 220 230 240 250
FHCRMILTYH MWWVCFCHWD ALTSSLHLPH WALFLFGLAL LTAVINPYWT
260 270 280
HKKTQQLLHP VDWNFAQEEA KGSRQERTNG QVPRKKRL
Length:288
Mass (Da):33,109
Last modified:May 24, 2005 - v1
Checksum:iA11225DE3CD7DEA5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK049145 mRNA Translation: BAC33570.1
AK088300 mRNA Translation: BAC40269.1
AK089692 mRNA Translation: BAC40944.1
AK164268 mRNA Translation: BAE37712.1
AK166905 mRNA Translation: BAE39107.1
AK169698 mRNA Translation: BAE41313.1
AK171446 mRNA Translation: BAE42456.1
CH466566 Genomic DNA Translation: EDL22189.1
CH466566 Genomic DNA Translation: EDL22190.1
CH466566 Genomic DNA Translation: EDL22191.1
CH466566 Genomic DNA Translation: EDL22192.1
RefSeqiNP_036130.1, NM_012000.3
XP_006508869.1, XM_006508806.3
XP_006508870.1, XM_006508807.2
UniGeneiMm.254027

Genome annotation databases

GeneIDi26889
KEGGimmu:26889

Similar proteinsi

Entry informationi

Entry nameiQ542J5_MOUSE
AccessioniPrimary (citable) accession number: Q542J5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: May 23, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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