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Protein
Submitted name:

Ceroid-lipofuscinosis, neuronal 8, isoform CRA_a

Gene

Cln8

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Ceroid-lipofuscinosis, neuronal 8, isoform CRA_aImported
Gene namesi
Name:Cln8Imported
ORF Names:mCG_14825Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1349447. Cln8.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei23 – 42HelicalSequence analysisAdd BLAST20
Transmembranei62 – 84HelicalSequence analysisAdd BLAST23
Transmembranei104 – 121HelicalSequence analysisAdd BLAST18
Transmembranei133 – 151HelicalSequence analysisAdd BLAST19
Transmembranei157 – 180HelicalSequence analysisAdd BLAST24
Transmembranei201 – 222HelicalSequence analysisAdd BLAST22
Transmembranei228 – 249HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSMUSG00000026317.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini62 – 262TLCInterPro annotationAdd BLAST201

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG4561. Eukaryota.
ENOG410XPW0. LUCA.
HOVERGENiHBG028338.
KOiK12360.
OMAiFHCRMVL.
OrthoDBiEOG091G0DG9.

Family and domain databases

InterProiView protein in InterPro
IPR006634. TLC-dom.
PfamiView protein in Pfam
PF03798. TRAM_LAG1_CLN8. 1 hit.
SMARTiView protein in SMART
SM00724. TLC. 1 hit.
PROSITEiView protein in PROSITE
PS50922. TLC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q542J5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPVSSHGLA ESIFDLDYAS WKIRSTLAVA GFVFYLGVFV VCHQLSSSLN
60 70 80 90 100
ATYRSLAAKE KVFWNLAATR AVFGVQSTTA GLWALLGDPV LYADKALGQQ
110 120 130 140 150
NWCWFHITTA TGFFFFENVA VHLSNLFFRT FDLFLVVHHL FAFLGFLGSA
160 170 180 190 200
INLRAGHYLA MTTLLLEMST PFTCISWMLL KAGWSDSLFW KANQWLMIHM
210 220 230 240 250
FHCRMILTYH MWWVCFCHWD ALTSSLHLPH WALFLFGLAL LTAVINPYWT
260 270 280
HKKTQQLLHP VDWNFAQEEA KGSRQERTNG QVPRKKRL
Length:288
Mass (Da):33,109
Last modified:May 24, 2005 - v1
Checksum:iA11225DE3CD7DEA5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK049145 mRNA. Translation: BAC33570.1.
AK088300 mRNA. Translation: BAC40269.1.
AK089692 mRNA. Translation: BAC40944.1.
AK164268 mRNA. Translation: BAE37712.1.
AK166905 mRNA. Translation: BAE39107.1.
AK169698 mRNA. Translation: BAE41313.1.
AK171446 mRNA. Translation: BAE42456.1.
CH466566 Genomic DNA. Translation: EDL22189.1.
CH466566 Genomic DNA. Translation: EDL22190.1.
CH466566 Genomic DNA. Translation: EDL22191.1.
CH466566 Genomic DNA. Translation: EDL22192.1.
RefSeqiNP_036130.1. NM_012000.3.
XP_006508869.1. XM_006508806.3.
XP_006508870.1. XM_006508807.2.
UniGeneiMm.254027.

Genome annotation databases

GeneIDi26889.
KEGGimmu:26889.

Similar proteinsi

Entry informationi

Entry nameiQ542J5_MOUSE
AccessioniPrimary (citable) accession number: Q542J5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 24, 2005
Last sequence update: May 24, 2005
Last modified: October 25, 2017
This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)