ID   BOLA3_HUMAN             Reviewed;         107 AA.
AC   Q53S33; G3XAB0;
DT   11-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT   24-MAY-2005, sequence version 1.
DT   24-JAN-2024, entry version 135.
DE   RecName: Full=BolA-like protein 3 {ECO:0000305};
GN   Name=BOLA3 {ECO:0000312|HGNC:HGNC:24415};
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC   TISSUE=Liver;
RA   Zhou Y., Cao J., Han Z.;
RL   Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   TISSUE=Colon;
RX   PubMed=7566098;
RA   Adams M.D., Kerlavage A.R., Fleischmann R.D., Fuldner R.A., Bult C.J.,
RA   Lee N.H., Kirkness E.F., Weinstock K.G., Gocayne J.D., White O.;
RT   "Initial assessment of human gene diversity and expression patterns based
RT   upon 83 million nucleotides of cDNA sequence.";
RL   Nature 377:3-174(1995).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15815621; DOI=10.1038/nature03466;
RA   Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P.,
RA   Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C.,
RA   Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L.,
RA   Du H., Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A.,
RA   Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J.,
RA   Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M.,
RA   Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T.,
RA   Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S.,
RA   Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K.,
RA   McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C.,
RA   Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S.,
RA   Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C.,
RA   Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M.,
RA   Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C.,
RA   Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J.,
RA   Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E.,
RA   Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X.,
RA   Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M.,
RA   Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C.,
RA   Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S.,
RA   Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H.,
RA   Wilson R.K.;
RT   "Generation and annotation of the DNA sequences of human chromosomes 2 and
RT   4.";
RL   Nature 434:724-731(2005).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Mural R.J., Istrail S., Sutton G., Florea L., Halpern A.L., Mobarry C.M.,
RA   Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J.,
RA   Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S.,
RA   Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H.,
RA   Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K.,
RA   Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D.,
RA   Hunkapiller M.W., Myers E.W., Venter J.C.;
RL   Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   TISSUE SPECIFICITY.
RX   PubMed=18548201; DOI=10.1007/s11010-008-9809-2;
RA   Zhou Y.B., Cao J.B., Wan B.B., Wang X.R., Ding G.H., Zhu H., Yang H.M.,
RA   Wang K.S., Zhang X., Han Z.G.;
RT   "hBolA, novel non-classical secreted proteins, belonging to different BolA
RT   family with functional divergence.";
RL   Mol. Cell. Biochem. 317:61-68(2008).
RN   [6]
RP   INVOLVEMENT IN MMDS2.
RX   PubMed=21944046; DOI=10.1016/j.ajhg.2011.08.011;
RA   Cameron J.M., Janer A., Levandovskiy V., Mackay N., Rouault T.A.,
RA   Tong W.H., Ogilvie I., Shoubridge E.A., Robinson B.H.;
RT   "Mutations in iron-sulfur cluster scaffold genes NFU1 and BOLA3 cause a
RT   fatal deficiency of multiple respiratory chain and 2-oxoacid dehydrogenase
RT   enzymes.";
RL   Am. J. Hum. Genet. 89:486-495(2011).
RN   [7]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21269460; DOI=10.1186/1752-0509-5-17;
RA   Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
RA   Bennett K.L., Superti-Furga G., Colinge J.;
RT   "Initial characterization of the human central proteome.";
RL   BMC Syst. Biol. 5:17-17(2011).
RN   [8]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=22814378; DOI=10.1073/pnas.1210303109;
RA   Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A.,
RA   Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E.,
RA   Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.;
RT   "N-terminal acetylome analyses and functional insights of the N-terminal
RT   acetyltransferase NatB.";
RL   Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012).
RN   [9]
RP   SUBCELLULAR LOCATION.
RX   PubMed=22746225; DOI=10.1089/ars.2011.4253;
RA   Willems P., Wanschers B.F., Esseling J., Szklarczyk R., Kudla U.,
RA   Duarte I., Forkink M., Nooteboom M., Swarts H., Gloerich J., Nijtmans L.,
RA   Koopman W., Huynen M.A.;
RT   "BOLA1 is an aerobic protein that prevents mitochondrial morphology changes
RT   induced by glutathione depletion.";
RL   Antioxid. Redox Signal. 18:129-138(2013).
RN   [10]
RP   STRUCTURE BY NMR OF 27-107, AND INTERACTION WITH NFU1.
RX   PubMed=27532772; DOI=10.7554/elife.16673;
RA   Uzarska M.A., Nasta V., Weiler B.D., Spantgar F., Ciofi-Baffoni S.,
RA   Saviello M.R., Gonnelli L., Muehlenhoff U., Banci L., Lill R.;
RT   "Mitochondrial Bol1 and Bol3 function as assembly factors for specific
RT   iron-sulfur proteins.";
RL   Elife 5:0-0(2016).
RN   [11]
RP   VARIANT MMDS2 ASN-67.
RX   PubMed=22562699; DOI=10.1007/s10545-012-9489-7;
RA   Haack T.B., Rolinski B., Haberberger B., Zimmermann F., Schum J.,
RA   Strecker V., Graf E., Athing U., Hoppen T., Wittig I., Sperl W.,
RA   Freisinger P., Mayr J.A., Strom T.M., Meitinger T., Prokisch H.;
RT   "Homozygous missense mutation in BOLA3 causes multiple mitochondrial
RT   dysfunctions syndrome in two siblings.";
RL   J. Inherit. Metab. Dis. 36:55-62(2013).
RN   [12]
RP   VARIANT MMDS2 46-ARG--ARG-107 DEL.
RX   PubMed=24334290; DOI=10.1093/brain/awt328;
RA   Baker P.R. II, Friederich M.W., Swanson M.A., Shaikh T., Bhattacharya K.,
RA   Scharer G.H., Aicher J., Creadon-Swindell G., Geiger E., MacLean K.N.,
RA   Lee W.T., Deshpande C., Freckmann M.L., Shih L.Y., Wasserstein M.,
RA   Rasmussen M.B., Lund A.M., Procopis P., Cameron J.M., Robinson B.H.,
RA   Brown G.K., Brown R.M., Compton A.G., Dieckmann C.L., Collard R.,
RA   Coughlin C.R. II, Spector E., Wempe M.F., Van Hove J.L.;
RT   "Variant non ketotic hyperglycinemia is caused by mutations in LIAS, BOLA3
RT   and the novel gene GLRX5.";
RL   Brain 137:366-379(2014).
RN   [13]
RP   VARIANT MMDS2 ARG-96.
RX   PubMed=26741492; DOI=10.1371/journal.pgen.1005679;
RA   Kohda M., Tokuzawa Y., Kishita Y., Nyuzuki H., Moriyama Y., Mizuno Y.,
RA   Hirata T., Yatsuka Y., Yamashita-Sugahara Y., Nakachi Y., Kato H.,
RA   Okuda A., Tamaru S., Borna N.N., Banshoya K., Aigaki T., Sato-Miyata Y.,
RA   Ohnuma K., Suzuki T., Nagao A., Maehata H., Matsuda F., Higasa K.,
RA   Nagasaki M., Yasuda J., Yamamoto M., Fushimi T., Shimura M.,
RA   Kaiho-Ichimoto K., Harashima H., Yamazaki T., Mori M., Murayama K.,
RA   Ohtake A., Okazaki Y.;
RT   "A comprehensive genomic analysis reveals the genetic landscape of
RT   mitochondrial respiratory chain complex deficiencies.";
RL   PLoS Genet. 12:E1005679-E1005679(2016).
CC   -!- FUNCTION: Acts as a mitochondrial iron-sulfur (Fe-S) cluster assembly
CC       factor that facilitates (Fe-S) cluster insertion into a subset of
CC       mitochondrial proteins. Probably acts together with NFU1
CC       (PubMed:27532772). {ECO:0000250|UniProtKB:P39724,
CC       ECO:0000305|PubMed:27532772}.
CC   -!- SUBUNIT: Interacts with NFU1 (PubMed:27532772).
CC       {ECO:0000269|PubMed:27532772}.
CC   -!- INTERACTION:
CC       Q53S33; O76003: GLRX3; NbExp=5; IntAct=EBI-12086950, EBI-374781;
CC       Q53S33; Q86SX6: GLRX5; NbExp=7; IntAct=EBI-12086950, EBI-1049910;
CC       Q53S33; PRO_0000141650 [Q86SX6]: GLRX5; NbExp=5; IntAct=EBI-12086950, EBI-27823755;
CC       Q53S33; Q0VD86: INCA1; NbExp=3; IntAct=EBI-12086950, EBI-6509505;
CC       Q53S33; O76011: KRT34; NbExp=3; IntAct=EBI-12086950, EBI-1047093;
CC       Q53S33; P43360: MAGEA6; NbExp=3; IntAct=EBI-12086950, EBI-1045155;
CC       Q53S33; Q9UMS0: NFU1; NbExp=2; IntAct=EBI-12086950, EBI-725252;
CC       Q53S33; Q9NRD5: PICK1; NbExp=3; IntAct=EBI-12086950, EBI-79165;
CC       Q53S33; Q9H0T7: RAB17; NbExp=3; IntAct=EBI-12086950, EBI-721615;
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:22746225}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q53S33-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q53S33-2; Sequence=VSP_045787;
CC   -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:18548201}.
CC   -!- DISEASE: Multiple mitochondrial dysfunctions syndrome 2 with
CC       hyperglycinemia (MMDS2) [MIM:614299]: A severe disorder of systemic
CC       energy metabolism, resulting in weakness, respiratory failure, lack of
CC       neurologic development, lactic acidosis, hyperglycinemia and early
CC       death. Some patients show failure to thrive, pulmonary hypertension,
CC       hypotonia and irritability. Biochemical features include severe
CC       combined deficiency of the 2-oxoacid dehydrogenases, defective lipoic
CC       acid synthesis and reduction in activity of mitochondrial respiratory
CC       chain complexes. {ECO:0000269|PubMed:21944046,
CC       ECO:0000269|PubMed:22562699, ECO:0000269|PubMed:24334290,
CC       ECO:0000269|PubMed:26741492}. Note=The disease is caused by variants
CC       affecting the gene represented in this entry.
CC   -!- SIMILARITY: Belongs to the BolA/IbaG family. {ECO:0000305}.
CC   -!- CAUTION: Was initially reported to be secreted via a non-classical
CC       export pathway (PubMed:18548201). It was however later shown that it
CC       localizes to mitochondria, in agreement with other members of the
CC       family (PubMed:22746225). {ECO:0000269|PubMed:18548201,
CC       ECO:0000269|PubMed:22746225}.
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DR   EMBL; DQ225187; ABB04094.1; -; mRNA.
DR   EMBL; AA316348; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AC073263; AAX93059.1; -; Genomic_DNA.
DR   EMBL; CH471053; EAW99700.1; -; Genomic_DNA.
DR   CCDS; CCDS33224.1; -. [Q53S33-2]
DR   CCDS; CCDS33225.1; -. [Q53S33-1]
DR   RefSeq; NP_001030582.1; NM_001035505.1. [Q53S33-2]
DR   RefSeq; NP_997717.2; NM_212552.2. [Q53S33-1]
DR   PDB; 2NCL; NMR; -; A=27-107.
DR   PDBsum; 2NCL; -.
DR   AlphaFoldDB; Q53S33; -.
DR   SMR; Q53S33; -.
DR   BioGRID; 132922; 39.
DR   ComplexPortal; CPX-6863; Mitochondrial BOLA3-GLRX5 iron-sulfur cluster assembly complex.
DR   IntAct; Q53S33; 31.
DR   STRING; 9606.ENSP00000331369; -.
DR   iPTMnet; Q53S33; -.
DR   MetOSite; Q53S33; -.
DR   PhosphoSitePlus; Q53S33; -.
DR   BioMuta; BOLA3; -.
DR   DMDM; 74726650; -.
DR   EPD; Q53S33; -.
DR   jPOST; Q53S33; -.
DR   MassIVE; Q53S33; -.
DR   MaxQB; Q53S33; -.
DR   PaxDb; 9606-ENSP00000331369; -.
DR   PeptideAtlas; Q53S33; -.
DR   ProteomicsDB; 33698; -.
DR   ProteomicsDB; 62531; -. [Q53S33-1]
DR   Pumba; Q53S33; -.
DR   TopDownProteomics; Q53S33-1; -. [Q53S33-1]
DR   Antibodypedia; 65208; 70 antibodies from 18 providers.
DR   DNASU; 388962; -.
DR   Ensembl; ENST00000295326.4; ENSP00000295326.4; ENSG00000163170.12. [Q53S33-2]
DR   Ensembl; ENST00000327428.10; ENSP00000331369.5; ENSG00000163170.12. [Q53S33-1]
DR   GeneID; 388962; -.
DR   KEGG; hsa:388962; -.
DR   MANE-Select; ENST00000327428.10; ENSP00000331369.5; NM_212552.3; NP_997717.2.
DR   UCSC; uc002skc.2; human. [Q53S33-1]
DR   AGR; HGNC:24415; -.
DR   CTD; 388962; -.
DR   DisGeNET; 388962; -.
DR   GeneCards; BOLA3; -.
DR   HGNC; HGNC:24415; BOLA3.
DR   HPA; ENSG00000163170; Tissue enhanced (tongue).
DR   MalaCards; BOLA3; -.
DR   MIM; 613183; gene.
DR   MIM; 614299; phenotype.
DR   neXtProt; NX_Q53S33; -.
DR   OpenTargets; ENSG00000163170; -.
DR   Orphanet; 401874; Multiple mitochondrial dysfunctions syndrome type 2.
DR   PharmGKB; PA142672554; -.
DR   VEuPathDB; HostDB:ENSG00000163170; -.
DR   eggNOG; KOG3348; Eukaryota.
DR   GeneTree; ENSGT00390000013048; -.
DR   HOGENOM; CLU_109462_0_2_1; -.
DR   InParanoid; Q53S33; -.
DR   OMA; EIQNMHG; -.
DR   OrthoDB; 167034at2759; -.
DR   PhylomeDB; Q53S33; -.
DR   TreeFam; TF332952; -.
DR   PathwayCommons; Q53S33; -.
DR   SignaLink; Q53S33; -.
DR   BioGRID-ORCS; 388962; 130 hits in 1122 CRISPR screens.
DR   ChiTaRS; BOLA3; human.
DR   GenomeRNAi; 388962; -.
DR   Pharos; Q53S33; Tbio.
DR   PRO; PR:Q53S33; -.
DR   Proteomes; UP000005640; Chromosome 2.
DR   RNAct; Q53S33; Protein.
DR   Bgee; ENSG00000163170; Expressed in left ventricle myocardium and 187 other cell types or tissues.
DR   GO; GO:0005829; C:cytosol; IDA:HPA.
DR   GO; GO:1990229; C:iron-sulfur cluster assembly complex; IPI:ComplexPortal.
DR   GO; GO:0005759; C:mitochondrial matrix; IBA:GO_Central.
DR   GO; GO:0005739; C:mitochondrion; IDA:HPA.
DR   GO; GO:0016604; C:nuclear body; IDA:HPA.
DR   GO; GO:0045454; P:cell redox homeostasis; NAS:ComplexPortal.
DR   GO; GO:0006879; P:intracellular iron ion homeostasis; NAS:ComplexPortal.
DR   GO; GO:0016226; P:iron-sulfur cluster assembly; NAS:ComplexPortal.
DR   GO; GO:0106035; P:protein maturation by [4Fe-4S] cluster transfer; IBA:GO_Central.
DR   Gene3D; 3.30.300.90; BolA-like; 1.
DR   InterPro; IPR002634; BolA.
DR   InterPro; IPR036065; BolA-like_sf.
DR   PANTHER; PTHR46188; BOLA-LIKE PROTEIN 3; 1.
DR   PANTHER; PTHR46188:SF1; BOLA-LIKE PROTEIN 3; 1.
DR   Pfam; PF01722; BolA; 1.
DR   SUPFAM; SSF82657; BolA-like; 1.
DR   Genevisible; Q53S33; HS.
PE   1: Evidence at protein level;
KW   3D-structure; Alternative splicing; Disease variant; Mitochondrion;
KW   Primary mitochondrial disease; Reference proteome.
FT   CHAIN           1..107
FT                   /note="BolA-like protein 3"
FT                   /id="PRO_0000245501"
FT   VAR_SEQ         58..107
FT                   /note="GCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKEMHGLRIFTSVPKR
FT                   -> TKRRNQRDAWIADIYLCPQTLTTPWLHRCCCLRPWMNFTDIILP (in isoform
FT                   2)"
FT                   /evidence="ECO:0000303|PubMed:7566098"
FT                   /id="VSP_045787"
FT   VARIANT         46..107
FT                   /note="Missing (in MMDS2)"
FT                   /evidence="ECO:0000269|PubMed:24334290"
FT                   /id="VAR_077910"
FT   VARIANT         67
FT                   /note="I -> N (in MMDS2; dbSNP:rs550855238)"
FT                   /evidence="ECO:0000269|PubMed:22562699"
FT                   /id="VAR_077911"
FT   VARIANT         96
FT                   /note="H -> R (in MMDS2; dbSNP:rs148674363)"
FT                   /evidence="ECO:0000269|PubMed:26741492"
FT                   /id="VAR_076180"
FT   HELIX           31..43
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   STRAND          47..54
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   TURN            57..59
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   STRAND          63..69
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   HELIX           70..74
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   HELIX           77..89
FT                   /evidence="ECO:0007829|PDB:2NCL"
FT   STRAND          99..101
FT                   /evidence="ECO:0007829|PDB:2NCL"
SQ   SEQUENCE   107 AA;  12114 MW;  EF3BF21DF14BD136 CRC64;
     MAAWSPAAAA PLLRGIRGLP LHHRMFATQT EGELRVTQIL KEKFPRATAI KVTDISGGCG
     AMYEIKIESE EFKEKRTVQQ HQMVNQALKE EIKEMHGLRI FTSVPKR
//