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Q53FR4

- Q53FR4_HUMAN

UniProt

Q53FR4 - Q53FR4_HUMAN

Protein
Submitted name:

Vacuolar protein sorting 35 variant

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (24 May 2005)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. protein transport Source: InterPro
    2. retrograde transport, endosome to Golgi Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Vacuolar protein sorting 35 variantImported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    Subcellular locationi

    GO - Cellular componenti

    1. lysosomal membrane Source: UniProtKB
    2. retromer complex Source: InterPro

    PTM / Processingi

    Proteomic databases

    PRIDEiQ53FR4.

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG054277.

    Family and domain databases

    InterProiIPR016024. ARM-type_fold.
    IPR005378. Vps35.
    [Graphical view]
    PANTHERiPTHR11099. PTHR11099. 1 hit.
    PfamiPF03635. Vps35. 1 hit.
    [Graphical view]
    PIRSFiPIRSF009375. Retromer_Vps35. 1 hit.
    SUPFAMiSSF48371. SSF48371. 3 hits.

    Sequencei

    Sequence statusi: Fragment.

    Q53FR4-1 [UniParc]FASTAAdd to Basket

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    MPTTQQSPQD EQEKLLDEAI QAVKVQSFQM KRCLDKNKLM DALKHASNML    50
    GELRTSMLSP KSYYELYMAI SDELHYLEVY LTDEFAKGRK VADLYELVQY 100
    AGNIIPRLYL LITVGVVYVK SFPQSRKDIL KDLVEMCRGV QHPLRGLFLR 150
    NYLLQCTRNI LPDEGEPTDE ETTGDISDSM DFVLLNFAEM NKLWVRMQHQ 200
    GHSRDREKRE RERQELRILV GTNLVRLSQL EGVNVERYKQ IVLTGILEQV 250
    VNCRDALAQE YLMECIIQVF PDEFHLQTLN PFLRACAELH QNVNVKNIII 300
    ALIDRLALFA HREDGPGIPA DIKLFDIFSQ QVATVIQSRQ DMPSEDVVSL 350
    QVSLINLAMK CYPDRVDYVD KVLETTVEIF NKLNLEHIAT SSAVSKELTR 400
    LLKIPVDTYN NILTVLKLKH FHPLFEYFDY ESRKSMSCYV LSNVLDYNTE 450
    IVSQDQVDSI MNLVSTLIQD QPDQPVEDPD PEDFADEQSL VGRFIHLLRS 500
    EDPDQQYLIS NTARKHFGAG GNQRIRFTLP PLVFAAYQLA FRYKENSKVD 550
    DKWEKKCQKI FSFAHQTISA LIKAELAELP LRLFLQGALA AGEIGFENHE 600
    TVAYEFMSQA FSLYEDEISD SKAQLAAITL IIGTFERMKC FSEENHEPLR 650
    TQCALAASKL LKKPDQGRAV STCAHLFWSG RNTDKNGEEL HGGKRVMECL 700
    KKALKIANQC MDPSLQVQLF IEILNRYIYF YEKENDAVTI QVLNQLIQKI 750
    REDLPNLESS EETEQINKHF HNTLEHLRLR RESPESEGPI YEGLIL 796
    Length:796
    Mass (Da):91,681
    Last modified:May 24, 2005 - v1
    Checksum:i4EE3078CF2910DD3
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK223218 mRNA. Translation: BAD96938.1.
    UniGeneiHs.454528.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK223218 mRNA. Translation: BAD96938.1 .
    UniGenei Hs.454528.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q53FR4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    HOVERGENi HBG054277.

    Family and domain databases

    InterProi IPR016024. ARM-type_fold.
    IPR005378. Vps35.
    [Graphical view ]
    PANTHERi PTHR11099. PTHR11099. 1 hit.
    Pfami PF03635. Vps35. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF009375. Retromer_Vps35. 1 hit.
    SUPFAMi SSF48371. SSF48371. 3 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides."
      Maruyama K., Sugano S.
      Gene 138:171-174(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Stomach mucosaImported.
    2. "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library."
      Suzuki Y., Yoshitomo K., Maruyama K., Suyama A., Sugano S.
      Gene 200:149-156(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Stomach mucosaImported.
    3. Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Stomach mucosaImported.

    Entry informationi

    Entry nameiQ53FR4_HUMAN
    AccessioniPrimary (citable) accession number: Q53FR4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 24, 2005
    Last sequence update: May 24, 2005
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.