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Q53217

- Y4VI_RHISN

UniProt

Q53217 - Y4VI_RHISN

Protein

Uncharacterized short-chain type dehydrogenase/reductase y4vI

Gene

NGR_a01150

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 2 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei141 – 1411SubstrateBy similarity
    Active sitei154 – 1541Proton acceptorPROSITE-ProRule annotation
    Active sitei420 – 4201Proton acceptorPROSITE-ProRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi12 – 3726NAD or NADPBy similarityAdd
    BLAST
    Nucleotide bindingi280 – 30425NAD or NADPBy similarityAdd
    BLAST

    GO - Molecular functioni

    1. oxidoreductase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-5567-MONOMER.
    SFRE394:GBYN-6166-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized short-chain type dehydrogenase/reductase y4vI (EC:1.-.-.-)
    Gene namesi
    Ordered Locus Names:NGR_a01150
    ORF Names:y4vI
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 548548Uncharacterized short-chain type dehydrogenase/reductase y4vIPRO_0000054889Add
    BLAST

    Proteomic databases

    PRIDEiQ53217.

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01150.

    Structurei

    3D structure databases

    ProteinModelPortaliQ53217.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 250250Short-chain dehydrogenase/reductase 1Add
    BLAST
    Regioni271 – 548278Short-chain dehydrogenase/reductase 2Add
    BLAST

    Domaini

    Contains two SDR domains.

    Sequence similaritiesi

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG1028.
    HOGENOMiHOG000087667.
    OMAiCEWASAG.
    OrthoDBiEOG6N3CR8.

    Family and domain databases

    Gene3Di3.40.50.720. 2 hits.
    InterProiIPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR020904. Sc_DH/Rdtase_CS.
    [Graphical view]
    PRINTSiPR00081. GDHRDH.
    PR00080. SDRFAMILY.
    PROSITEiPS00061. ADH_SHORT. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q53217-1 [UniParc]FASTAAdd to Basket

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    MDDRQVQPGR VIVVTGAAGG IGRALVDIFA ANGDVVVAVD LPDSGVIELG    50
    QNLGEPHLGL EVDVSREDDV VALRALLEKR FSRIEVLVNN AGIGPTMAAT 100
    ADTALEDFQR ALAINLVGAY SVACETAKLM KPGAAIVNVA SLAGLLGNPK 150
    RSAYAASKAG LISITKSLAC RWASRGIRVT AVAPGHVRTP MVAELERAGK 200
    LDVSAIRRRV PLGRIARPDE IARAVRFLAS AQASYITGST LVVDGGWMSV 250
    NQPGGAHQAQ DRTPGAEFMR PVEDTDARTV IVMGGATGVG AAIARRFAEN 300
    GDTVVIADGD GEEAVKLAGL LGDKHLSRRV DRTVETEVVS LFEELRERFG 350
    HLDVFVNGMN EILVPNTEES PEVLKRILDV NLTGAFTCVR EAAISMRSGS 400
    VILNLGASLS LSPLAPSHAY GAYNAGIDML TRCTAAELGP LGIRTATVAP 450
    GYIRTCAANR LAAVAGMDSA SLRQRIPLGR VGDAEEVAEA AYFLASFDAS 500
    YINGSILHVD GGLISSREAG WGSEVDGAIS AEMRPQRRPA ARWRLLSP 548
    Length:548
    Mass (Da):57,594
    Last modified:November 1, 1997 - v2
    Checksum:i399598C5DF17C23F
    GO

    Sequence cautioni

    The sequence CAA92424.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92424.1. Different initiation.
    U00090 Genomic DNA. Translation: AAB91897.1.
    RefSeqiNP_444110.1. NC_000914.2.
    WP_010875153.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91897; AAB91897; NGR_a01150.
    GeneIDi962233.
    KEGGirhi:NGR_a01150.
    PATRICi32300929. VBIRhiSp122450_0100.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92424.1 . Different initiation.
    U00090 Genomic DNA. Translation: AAB91897.1 .
    RefSeqi NP_444110.1. NC_000914.2.
    WP_010875153.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali Q53217.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01150.

    Proteomic databases

    PRIDEi Q53217.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91897 ; AAB91897 ; NGR_a01150 .
    GeneIDi 962233.
    KEGGi rhi:NGR_a01150.
    PATRICi 32300929. VBIRhiSp122450_0100.

    Phylogenomic databases

    eggNOGi COG1028.
    HOGENOMi HOG000087667.
    OMAi CEWASAG.
    OrthoDBi EOG6N3CR8.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-5567-MONOMER.
    SFRE394:GBYN-6166-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.720. 2 hits.
    InterProi IPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR020904. Sc_DH/Rdtase_CS.
    [Graphical view ]
    PRINTSi PR00081. GDHRDH.
    PR00080. SDRFAMILY.
    PROSITEi PS00061. ADH_SHORT. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
      Freiberg C., Perret X., Broughton W.J., Rosenthal A.
      Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4VI_RHISN
    AccessioniPrimary (citable) accession number: Q53217
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 79 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Multifunctional enzyme, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3