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Protein

Uncharacterized short-chain type dehydrogenase/reductase y4vI

Gene

NGR_a01150

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei141SubstrateBy similarity1
Active sitei154Proton acceptorPROSITE-ProRule annotation1
Active sitei420Proton acceptorPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi12 – 37NAD or NADPBy similarityAdd BLAST26
Nucleotide bindingi280 – 304NAD or NADPBy similarityAdd BLAST25

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4vI (EC:1.-.-.-)
Gene namesi
Ordered Locus Names:NGR_a01150
ORF Names:y4vI
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000548891 – 548Uncharacterized short-chain type dehydrogenase/reductase y4vIAdd BLAST548

Proteomic databases

PRIDEiQ53217.

Structurei

3D structure databases

ProteinModelPortaliQ53217.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 250Short-chain dehydrogenase/reductase 1Add BLAST250
Regioni271 – 548Short-chain dehydrogenase/reductase 2Add BLAST278

Domaini

Contains two SDR domains.

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000087667.
OMAiCEWASAG.
OrthoDBiPOG091H012M.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 2 hits.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53217-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDDRQVQPGR VIVVTGAAGG IGRALVDIFA ANGDVVVAVD LPDSGVIELG
60 70 80 90 100
QNLGEPHLGL EVDVSREDDV VALRALLEKR FSRIEVLVNN AGIGPTMAAT
110 120 130 140 150
ADTALEDFQR ALAINLVGAY SVACETAKLM KPGAAIVNVA SLAGLLGNPK
160 170 180 190 200
RSAYAASKAG LISITKSLAC RWASRGIRVT AVAPGHVRTP MVAELERAGK
210 220 230 240 250
LDVSAIRRRV PLGRIARPDE IARAVRFLAS AQASYITGST LVVDGGWMSV
260 270 280 290 300
NQPGGAHQAQ DRTPGAEFMR PVEDTDARTV IVMGGATGVG AAIARRFAEN
310 320 330 340 350
GDTVVIADGD GEEAVKLAGL LGDKHLSRRV DRTVETEVVS LFEELRERFG
360 370 380 390 400
HLDVFVNGMN EILVPNTEES PEVLKRILDV NLTGAFTCVR EAAISMRSGS
410 420 430 440 450
VILNLGASLS LSPLAPSHAY GAYNAGIDML TRCTAAELGP LGIRTATVAP
460 470 480 490 500
GYIRTCAANR LAAVAGMDSA SLRQRIPLGR VGDAEEVAEA AYFLASFDAS
510 520 530 540
YINGSILHVD GGLISSREAG WGSEVDGAIS AEMRPQRRPA ARWRLLSP
Length:548
Mass (Da):57,594
Last modified:November 1, 1997 - v2
Checksum:i399598C5DF17C23F
GO

Sequence cautioni

The sequence CAA92424 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92424.1. Different initiation.
U00090 Genomic DNA. Translation: AAB91897.1.
RefSeqiNP_444110.1. NC_000914.2.
WP_010875153.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91897; AAB91897; NGR_a01150.
GeneIDi962233.
KEGGirhi:NGR_a01150.
PATRICi32300929. VBIRhiSp122450_0100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92424.1. Different initiation.
U00090 Genomic DNA. Translation: AAB91897.1.
RefSeqiNP_444110.1. NC_000914.2.
WP_010875153.1. NC_000914.2.

3D structure databases

ProteinModelPortaliQ53217.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ53217.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91897; AAB91897; NGR_a01150.
GeneIDi962233.
KEGGirhi:NGR_a01150.
PATRICi32300929. VBIRhiSp122450_0100.

Phylogenomic databases

HOGENOMiHOG000087667.
OMAiCEWASAG.
OrthoDBiPOG091H012M.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 2 hits.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4VI_SINFN
AccessioniPrimary (citable) accession number: Q53217
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 93 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Multifunctional enzyme, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.