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Q53217

- Y4VI_RHISN

UniProt

Q53217 - Y4VI_RHISN

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Protein

Uncharacterized short-chain type dehydrogenase/reductase y4vI

Gene

NGR_a01150

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei141 – 1411SubstrateBy similarity
Active sitei154 – 1541Proton acceptorPROSITE-ProRule annotation
Active sitei420 – 4201Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi12 – 3726NAD or NADPBy similarityAdd
BLAST
Nucleotide bindingi280 – 30425NAD or NADPBy similarityAdd
BLAST

GO - Molecular functioni

  1. oxidoreductase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5567-MONOMER.
SFRE394:GBYN-6166-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4vI (EC:1.-.-.-)
Gene namesi
Ordered Locus Names:NGR_a01150
ORF Names:y4vI
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 548548Uncharacterized short-chain type dehydrogenase/reductase y4vIPRO_0000054889Add
BLAST

Proteomic databases

PRIDEiQ53217.

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01150.

Structurei

3D structure databases

ProteinModelPortaliQ53217.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 250250Short-chain dehydrogenase/reductase 1Add
BLAST
Regioni271 – 548278Short-chain dehydrogenase/reductase 2Add
BLAST

Domaini

Contains two SDR domains.

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1028.
HOGENOMiHOG000087667.
OMAiCEWASAG.
OrthoDBiEOG6N3CR8.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53217-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDDRQVQPGR VIVVTGAAGG IGRALVDIFA ANGDVVVAVD LPDSGVIELG
60 70 80 90 100
QNLGEPHLGL EVDVSREDDV VALRALLEKR FSRIEVLVNN AGIGPTMAAT
110 120 130 140 150
ADTALEDFQR ALAINLVGAY SVACETAKLM KPGAAIVNVA SLAGLLGNPK
160 170 180 190 200
RSAYAASKAG LISITKSLAC RWASRGIRVT AVAPGHVRTP MVAELERAGK
210 220 230 240 250
LDVSAIRRRV PLGRIARPDE IARAVRFLAS AQASYITGST LVVDGGWMSV
260 270 280 290 300
NQPGGAHQAQ DRTPGAEFMR PVEDTDARTV IVMGGATGVG AAIARRFAEN
310 320 330 340 350
GDTVVIADGD GEEAVKLAGL LGDKHLSRRV DRTVETEVVS LFEELRERFG
360 370 380 390 400
HLDVFVNGMN EILVPNTEES PEVLKRILDV NLTGAFTCVR EAAISMRSGS
410 420 430 440 450
VILNLGASLS LSPLAPSHAY GAYNAGIDML TRCTAAELGP LGIRTATVAP
460 470 480 490 500
GYIRTCAANR LAAVAGMDSA SLRQRIPLGR VGDAEEVAEA AYFLASFDAS
510 520 530 540
YINGSILHVD GGLISSREAG WGSEVDGAIS AEMRPQRRPA ARWRLLSP
Length:548
Mass (Da):57,594
Last modified:November 1, 1997 - v2
Checksum:i399598C5DF17C23F
GO

Sequence cautioni

The sequence CAA92424.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92424.1. Different initiation.
U00090 Genomic DNA. Translation: AAB91897.1.
RefSeqiNP_444110.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91897; AAB91897; NGR_a01150.
GeneIDi962233.
KEGGirhi:NGR_a01150.
PATRICi32300929. VBIRhiSp122450_0100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92424.1 . Different initiation.
U00090 Genomic DNA. Translation: AAB91897.1 .
RefSeqi NP_444110.1. NC_000914.2.

3D structure databases

ProteinModelPortali Q53217.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01150.

Proteomic databases

PRIDEi Q53217.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91897 ; AAB91897 ; NGR_a01150 .
GeneIDi 962233.
KEGGi rhi:NGR_a01150.
PATRICi 32300929. VBIRhiSp122450_0100.

Phylogenomic databases

eggNOGi COG1028.
HOGENOMi HOG000087667.
OMAi CEWASAG.
OrthoDBi EOG6N3CR8.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-5567-MONOMER.
SFRE394:GBYN-6166-MONOMER.

Family and domain databases

Gene3Di 3.40.50.720. 2 hits.
InterProi IPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view ]
PRINTSi PR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEi PS00061. ADH_SHORT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4VI_RHISN
AccessioniPrimary (citable) accession number: Q53217
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Multifunctional enzyme, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3