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Q53217 (Y4VI_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4vI

EC=1.-.-.-
Gene names
Ordered Locus Names:NGR_a01150
ORF Names:y4vI
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length548 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Domain

Contains two SDR domains.

Sequence similarities

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Sequence caution

The sequence CAA92424.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   DomainRepeat
   Molecular functionOxidoreductase
   Technical termComplete proteome
Multifunctional enzyme
Plasmid
Gene Ontology (GO)
   Molecular_functionoxidoreductase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 548548Uncharacterized short-chain type dehydrogenase/reductase y4vI
PRO_0000054889

Regions

Nucleotide binding12 – 3726NAD or NADP By similarity
Nucleotide binding280 – 30425NAD or NADP By similarity
Region1 – 250250Short-chain dehydrogenase/reductase 1
Region271 – 548278Short-chain dehydrogenase/reductase 2

Sites

Active site1541Proton acceptor By similarity
Active site4201Proton acceptor By similarity
Binding site1411Substrate By similarity

Sequences

Sequence LengthMass (Da)Tools
Q53217 [UniParc].

Last modified November 1, 1997. Version 2.
Checksum: 399598C5DF17C23F

FASTA54857,594
        10         20         30         40         50         60 
MDDRQVQPGR VIVVTGAAGG IGRALVDIFA ANGDVVVAVD LPDSGVIELG QNLGEPHLGL 

        70         80         90        100        110        120 
EVDVSREDDV VALRALLEKR FSRIEVLVNN AGIGPTMAAT ADTALEDFQR ALAINLVGAY 

       130        140        150        160        170        180 
SVACETAKLM KPGAAIVNVA SLAGLLGNPK RSAYAASKAG LISITKSLAC RWASRGIRVT 

       190        200        210        220        230        240 
AVAPGHVRTP MVAELERAGK LDVSAIRRRV PLGRIARPDE IARAVRFLAS AQASYITGST 

       250        260        270        280        290        300 
LVVDGGWMSV NQPGGAHQAQ DRTPGAEFMR PVEDTDARTV IVMGGATGVG AAIARRFAEN 

       310        320        330        340        350        360 
GDTVVIADGD GEEAVKLAGL LGDKHLSRRV DRTVETEVVS LFEELRERFG HLDVFVNGMN 

       370        380        390        400        410        420 
EILVPNTEES PEVLKRILDV NLTGAFTCVR EAAISMRSGS VILNLGASLS LSPLAPSHAY 

       430        440        450        460        470        480 
GAYNAGIDML TRCTAAELGP LGIRTATVAP GYIRTCAANR LAAVAGMDSA SLRQRIPLGR 

       490        500        510        520        530        540 
VGDAEEVAEA AYFLASFDAS YINGSILHVD GGLISSREAG WGSEVDGAIS AEMRPQRRPA 


ARWRLLSP 

« Hide

References

« Hide 'large scale' references
[1]"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
Freiberg C., Perret X., Broughton W.J., Rosenthal A.
Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[3]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z68203 Genomic DNA. Translation: CAA92424.1. Different initiation.
U00090 Genomic DNA. Translation: AAB91897.1.
RefSeqNP_444110.1. NC_000914.2.

3D structure databases

ProteinModelPortalQ53217.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01150.

Proteomic databases

PRIDEQ53217.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91897; AAB91897; NGR_a01150.
GeneID962233.
KEGGrhi:NGR_a01150.
PATRIC32300929. VBIRhiSp122450_0100.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1028.
HOGENOMHOG000087667.
OMACEWASAG.
OrthoDBEOG6N3CR8.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-5567-MONOMER.
SFRE394:GBYN-6166-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 2 hits.
InterProIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PRINTSPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4VI_RHISN
AccessionPrimary (citable) accession number: Q53217
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names