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Q53204 (FDXN_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ferredoxin-like protein in nif region
Gene names
Name:fdxN
Ordered Locus Names:NGR_a01280
ORF Names:y4uL
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length64 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Cofactor

Binds 2 4Fe-4S clusters Probable.

Sequence similarities

Contains 1 4Fe-4S ferredoxin-type domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 6464Ferredoxin-like protein in nif region
PRO_0000159165

Regions

Domain2 – 30294Fe-4S ferredoxin-type

Sites

Metal binding101Iron-sulfur 1 (4Fe-4S) By similarity
Metal binding131Iron-sulfur 1 (4Fe-4S) By similarity
Metal binding161Iron-sulfur 1 (4Fe-4S) By similarity
Metal binding201Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding391Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding421Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding511Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding551Iron-sulfur 1 (4Fe-4S) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q53204 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 39938F67BC3394B4

FASTA646,950
        10         20         30         40         50         60 
MAFKIIASQC TQCGACEFEC PSNAIELKGE KYVIDPKKCT ECKGVFEIQQ CASVCPMPKT 


CVPA 

« Hide

References

« Hide 'large scale' references
[1]"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
Freiberg C., Perret X., Broughton W.J., Rosenthal A.
Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[3]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z68203 Genomic DNA. Translation: CAA92411.1.
U00090 Genomic DNA. Translation: AAB91884.1.
RefSeqNP_444097.1. NC_000914.2.

3D structure databases

ProteinModelPortalQ53204.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01280.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91884; AAB91884; NGR_a01280.
GeneID962466.
KEGGrhi:NGR_a01280.
PATRIC32300953. VBIRhiSp122450_0112.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1145.
HOGENOMHOG000044615.
OMANDMYIID.
OrthoDBEOG6CVV7G.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6179-MONOMER.

Family and domain databases

InterProIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamPF13237. Fer4_10. 1 hit.
[Graphical view]
PROSITEPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameFDXN_RHISN
AccessionPrimary (citable) accession number: Q53204
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names