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Q53204

- FDXN_RHISN

UniProt

Q53204 - FDXN_RHISN

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Protein

Ferredoxin-like protein in nif region

Gene
fdxN, NGR_a01280, y4uL
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

Cofactori

Binds 2 4Fe-4S clusters Inferred.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi10 – 101Iron-sulfur 1 (4Fe-4S) By similarity
Metal bindingi13 – 131Iron-sulfur 1 (4Fe-4S) By similarity
Metal bindingi16 – 161Iron-sulfur 1 (4Fe-4S) By similarity
Metal bindingi20 – 201Iron-sulfur 2 (4Fe-4S) By similarity
Metal bindingi39 – 391Iron-sulfur 2 (4Fe-4S) By similarity
Metal bindingi42 – 421Iron-sulfur 2 (4Fe-4S) By similarity
Metal bindingi51 – 511Iron-sulfur 2 (4Fe-4S) By similarity
Metal bindingi55 – 551Iron-sulfur 1 (4Fe-4S) By similarity

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. nitrogen fixation Source: UniProtKB-KW
  2. oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Nitrogen fixation, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6179-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-like protein in nif region
Gene namesi
Name:fdxN
Ordered Locus Names:NGR_a01280
ORF Names:y4uL
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6464Ferredoxin-like protein in nif regionPRO_0000159165Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01280.

Structurei

3D structure databases

ProteinModelPortaliQ53204.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 30294Fe-4S ferredoxin-typeAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1145.
HOGENOMiHOG000044615.
OMAiNDMYIID.
OrthoDBiEOG6CVV7G.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13237. Fer4_10. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53204-1 [UniParc]FASTAAdd to Basket

« Hide

MAFKIIASQC TQCGACEFEC PSNAIELKGE KYVIDPKKCT ECKGVFEIQQ   50
CASVCPMPKT CVPA 64
Length:64
Mass (Da):6,950
Last modified:November 1, 1996 - v1
Checksum:i39938F67BC3394B4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z68203 Genomic DNA. Translation: CAA92411.1.
U00090 Genomic DNA. Translation: AAB91884.1.
RefSeqiNP_444097.1. NC_000914.2.
WP_010875166.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91884; AAB91884; NGR_a01280.
GeneIDi962466.
KEGGirhi:NGR_a01280.
PATRICi32300953. VBIRhiSp122450_0112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z68203 Genomic DNA. Translation: CAA92411.1 .
U00090 Genomic DNA. Translation: AAB91884.1 .
RefSeqi NP_444097.1. NC_000914.2.
WP_010875166.1. NC_000914.2.

3D structure databases

ProteinModelPortali Q53204.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01280.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91884 ; AAB91884 ; NGR_a01280 .
GeneIDi 962466.
KEGGi rhi:NGR_a01280.
PATRICi 32300953. VBIRhiSp122450_0112.

Phylogenomic databases

eggNOGi COG1145.
HOGENOMi HOG000044615.
OMAi NDMYIID.
OrthoDBi EOG6CVV7G.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6179-MONOMER.

Family and domain databases

InterProi IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view ]
Pfami PF13237. Fer4_10. 1 hit.
[Graphical view ]
PROSITEi PS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiFDXN_RHISN
AccessioniPrimary (citable) accession number: Q53204
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: September 3, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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