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Q53204

- FDXN_RHISN

UniProt

Q53204 - FDXN_RHISN

Protein

Ferredoxin-like protein in nif region

Gene

fdxN

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Cofactori

    Binds 2 4Fe-4S clusters.Curated

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi10 – 101Iron-sulfur 1 (4Fe-4S)By similarity
    Metal bindingi13 – 131Iron-sulfur 1 (4Fe-4S)By similarity
    Metal bindingi16 – 161Iron-sulfur 1 (4Fe-4S)By similarity
    Metal bindingi20 – 201Iron-sulfur 2 (4Fe-4S)By similarity
    Metal bindingi39 – 391Iron-sulfur 2 (4Fe-4S)By similarity
    Metal bindingi42 – 421Iron-sulfur 2 (4Fe-4S)By similarity
    Metal bindingi51 – 511Iron-sulfur 2 (4Fe-4S)By similarity
    Metal bindingi55 – 551Iron-sulfur 1 (4Fe-4S)By similarity

    GO - Molecular functioni

    1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. nitrogen fixation Source: UniProtKB-KW
    2. oxidation-reduction process Source: UniProtKB-KW

    Keywords - Biological processi

    Electron transport, Nitrogen fixation, Transport

    Keywords - Ligandi

    4Fe-4S, Iron, Iron-sulfur, Metal-binding

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6179-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ferredoxin-like protein in nif region
    Gene namesi
    Name:fdxN
    Ordered Locus Names:NGR_a01280
    ORF Names:y4uL
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 6464Ferredoxin-like protein in nif regionPRO_0000159165Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01280.

    Structurei

    3D structure databases

    ProteinModelPortaliQ53204.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini2 – 30294Fe-4S ferredoxin-typePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 4Fe-4S ferredoxin-type domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG1145.
    HOGENOMiHOG000044615.
    OMAiNDMYIID.
    OrthoDBiEOG6CVV7G.

    Family and domain databases

    InterProiIPR017896. 4Fe4S_Fe-S-bd.
    IPR017900. 4Fe4S_Fe_S_CS.
    [Graphical view]
    PfamiPF13237. Fer4_10. 1 hit.
    [Graphical view]
    PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
    PS51379. 4FE4S_FER_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q53204-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAFKIIASQC TQCGACEFEC PSNAIELKGE KYVIDPKKCT ECKGVFEIQQ   50
    CASVCPMPKT CVPA 64
    Length:64
    Mass (Da):6,950
    Last modified:November 1, 1996 - v1
    Checksum:i39938F67BC3394B4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92411.1.
    U00090 Genomic DNA. Translation: AAB91884.1.
    RefSeqiNP_444097.1. NC_000914.2.
    WP_010875166.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91884; AAB91884; NGR_a01280.
    GeneIDi962466.
    KEGGirhi:NGR_a01280.
    PATRICi32300953. VBIRhiSp122450_0112.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92411.1 .
    U00090 Genomic DNA. Translation: AAB91884.1 .
    RefSeqi NP_444097.1. NC_000914.2.
    WP_010875166.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali Q53204.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01280.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91884 ; AAB91884 ; NGR_a01280 .
    GeneIDi 962466.
    KEGGi rhi:NGR_a01280.
    PATRICi 32300953. VBIRhiSp122450_0112.

    Phylogenomic databases

    eggNOGi COG1145.
    HOGENOMi HOG000044615.
    OMAi NDMYIID.
    OrthoDBi EOG6CVV7G.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6179-MONOMER.

    Family and domain databases

    InterProi IPR017896. 4Fe4S_Fe-S-bd.
    IPR017900. 4Fe4S_Fe_S_CS.
    [Graphical view ]
    Pfami PF13237. Fer4_10. 1 hit.
    [Graphical view ]
    PROSITEi PS00198. 4FE4S_FER_1. 1 hit.
    PS51379. 4FE4S_FER_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
      Freiberg C., Perret X., Broughton W.J., Rosenthal A.
      Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiFDXN_RHISN
    AccessioniPrimary (citable) accession number: Q53204
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 87 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3